Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1123 ATGAACAACAATAGAACCACCAGAAGATCATCCATGCCTTCCACTCCAAATGCCTTCCCTAAACGCCGTCACTCCTCCGATCAAAACCACCGCAGAATCTCCTCCGCGCCTCTCCGCCACTTCGATATCACCGGCGAAATGATCGGCGCCACCGTCCCCAGGAAAGCTCGTTCAGCTTCTGTGAAAAGACCGCATGAGAGTGCGGTGGAGGAGCAGAGTTTACAGACTGAAGCGGCGTCGCCGTCGTCTTTTCGGAAGAAGATGAAATCGATTGAACCGGAAACTCAGATTCCGAAGGCGGCGGCGTCGCCGGCGACGACTGAGGAAGACATCGAGATTGAGATAGCTGAGCTTCTCTTCGGGTTAAGGTCATCCACTAACCGCGACTCTTCTTCTTCGCAAAAGCTTGGAGCAAACGATTCACATCCTCAACGGAGTGCTAGCCCTTCCATGGAAGCTGAGGAAGAGAAAATGGAAGATTACTCTGTGGCTGAGAACAATTCAGCTGCTGAATCAGTTAGAATTGAAAATGAACAACCTGAGAAAATAGAGAAAGCTTCACCTGGATCAGCGATGATTTCGGGTTGTCACGAGGATGAGAATGCTGCTTCTGGTAAAGAAGTCGGGTCATCCGAATTCCCAAAGGAGGACAATGAGAAAGACAATAAGAATTCAGGTGATACTGTGAATGGAAGATCAGAACTCTTATCAGGCTCCAAGTCTAAAATGGATGTTGATAAACTGGGTTCTGTTTCTACCAGAGAGATTTCTGCTGTTCCGGGCGCCAATGACCAACGAGCGGACAAGTTTGAGATTGATCTGATGGCTCCTCCACCTATGTCCCTATCCGCGGAGATGGGTAACTTATCAAGGTGTGTTAAGAAAGAGGAAATGAAGGAAGATGTGAAGATAAAATTTGATTTGGAAAATCAGGACAGGAATGAGGAGCAACTTCTCACACTGACAAGTCCCAAAGTGGAGAAAAGTGTTCAATCCAGCTCAATGCCTTTGTCAAAAGCTGTATCAGAATGGCCAAACTGTCTCTCTCTACATGGATACGGGCCTCCCATGGAAACAGTTGTGAAGACAGAGAAAACCACAGGATCAACGACAGGCCAAGAGAGGGTGAATTTTGCTCTCTCTAAGCCTCGAACTAAAAGATGTGCTACCCATCATTGCATTGCCAGTAACATCTTCAGGCACCAGCAATGTGCAATGATGAACCCCCTTTTGCCATTAGCTATTGGCTTTGGTTCTCTGGGTGACACAGAGCCCAGCTATGTCAATAGAATGCGGTCTGCAGAAAATGTGGTTGTCCGGAAGCAGTCTCAAAAGCACTCACCTGGCATGGACCAAAATGCTGCACAAGGGAAGGGAAGGGCTGGCGCAAGTGAGTTTAGTCTTGCTGCAACCAAAAGTCCTGGTCCTGCCAACCCAATGGACTCGATACAAATGAAGCAGCTTGTGCTTCAGCAAGGTCATCCAGGGTCTTTTGGCAATACACTGCATGGTCCTACTTTCCTATTTCCTCCGGGCCAACATCAAGCATCTGTAACAACAGCTACTACTCAGGCAGGTGCTGCGAGCTCCATTATCAGTTCTTCCTCATCTAGTAAATCCCATAGTTCAGCAGCTGGTTCTTTTAGTACCTCAACACTGCCAGCAGTTCCCTCTCCGATGAGCTTCAGCTACCCAAATTTGTCTATCAATGATACTCCATATATGACAACAGTTCAGAATACTGGGTATCCATTCCCGTTTTTAACTCCTCTTGGAGCATCCGCAGCTATCAGAGGTGCAAGCCCTGCGCAATCAACACCTATACTCAATGGGCCTTTGTACTCATCTCAAATGTTCCATACCCTTCAGTATCCACAACAGCATCCTCATTCCCAAGCAATGGTTCAACCAAGTTATCTTAATGCAAGCTCTTCAAGTGTTTTGTCATCATCTCATAAGCAGTCACAGGGTATGCAAGTTAACCACAATGTTTTGCCCTCTACCTCTATGCAACTACAGCAGTCACAAAAGGAGCACACCTCGTTCTCTCGTACTTCTAAGCTTGAGACTGGGATGGCTGGAGAGAATGCCGTATCTGTTGCTAGTGGAAAAAATCACTCCCAAAAGAATGTGTATGGACAGAAGTTCACAATTCCAGTTCAGCCACTGAACCTTTCTTTCAGGCCATCTGCAGCATCAGACAATTTTGCTGGCAATAGTGGAAATTTTGGTGACAAGCAGCAATTGCCACAGGCTGTGAAAGGGGGAGCTGAGCAAATACCATCTCAAGCATTTGCAATATCGTTTTCTGGATTTAACGGGACCAGTGCTCCTTCAAATCTTAACTTCTCAACCATGGCACAGAACCCAGTGATATTTCAGAGCCTGCCTGATGTTGCATGGCCTGGGTATCAAGCTGTAAGTACATCTCATTCTACTCAGCAAAAGATATATTCGCTTAATGAAGGGAAGAGTGGAGGTAATTCTTCCCACCAAGATGATGAAATGAAAGCCACCTCTGGGAAGCCATCAACCAATGGGCCAACTACTCTTGTTTTTGATAATTCATCAAAAAATCTCAACTTTGCTTCATCTTCCATGAATGGAAACCGGCCTAGTCGTTCCATTACTTCAAGTGCAGCAACCTCAAGTTTGCCTCTTTCTAGCAATGCTTCAAATTATCAACAGCCACCGCAGTTTCTTCATCTTCAGCAGCAGCATGGTATGTTGCAGCAGCATCCTGCTATGGCTACTCTATATAAAGCATCATCAACTACATCTAATGCTACAACAGCTACGAAGTTTTTTAACGGTCCCCCGGTTTTCACACAAACTCAAACTCAGTGCAAAAGTTCTAATCAAGCTTCACAGTCGAAAAACTCGGGAAAAACCCCAGATTCTCAGGTTACATCTATTATAACATCTACTACACCAACCTTCAAAAACAATTCTCAGGAACATGGAAGAGTTATACAGGGTCATAAGCAAATATCTTTTGGGGGAAATTACATGTCGTCCCTGCCACCCCAAGGGCAACAACTACTCAGTAACAACCAGCCTCTTGGTTCAACTGCAACAGTTGCTGGGATTCCACCTCATGGGGGCAACTTGAAGACAAATTCCCAGGGGAGCAAAGTTGGTCCATCGATGAACACTTCGCAGACGCAACAAACTGAGAATTCCTCTGCTGGGACAGGCCAAAAATCTTCCCCAGTTTGTGGGAGAAATGTCCCATCGATTTTGAGCTCATGCCCTAGCCAACTATCTGAGCTGAAGTATTAA 3282 0.4595 MNNNRTTRRSSMPSTPNAFPKRRHSSDQNHRRISSAPLRHFDITGEMIGATVPRKARSASVKRPHESAVEEQSLQTEAASPSSFRKKMKSIEPETQIPKAAASPATTEEDIEIEIAELLFGLRSSTNRDSSSSQKLGANDSHPQRSASPSMEAEEEKMEDYSVAENNSAAESVRIENEQPEKIEKASPGSAMISGCHEDENAASGKEVGSSEFPKEDNEKDNKNSGDTVNGRSELLSGSKSKMDVDKLGSVSTREISAVPGANDQRADKFEIDLMAPPPMSLSAEMGNLSRCVKKEEMKEDVKIKFDLENQDRNEEQLLTLTSPKVEKSVQSSSMPLSKAVSEWPNCLSLHGYGPPMETVVKTEKTTGSTTGQERVNFALSKPRTKRCATHHCIASNIFRHQQCAMMNPLLPLAIGFGSLGDTEPSYVNRMRSAENVVVRKQSQKHSPGMDQNAAQGKGRAGASEFSLAATKSPGPANPMDSIQMKQLVLQQGHPGSFGNTLHGPTFLFPPGQHQASVTTATTQAGAASSIISSSSSSKSHSSAAGSFSTSTLPAVPSPMSFSYPNLSINDTPYMTTVQNTGYPFPFLTPLGASAAIRGASPAQSTPILNGPLYSSQMFHTLQYPQQHPHSQAMVQPSYLNASSSSVLSSSHKQSQGMQVNHNVLPSTSMQLQQSQKEHTSFSRTSKLETGMAGENAVSVASGKNHSQKNVYGQKFTIPVQPLNLSFRPSAASDNFAGNSGNFGDKQQLPQAVKGGAEQIPSQAFAISFSGFNGTSAPSNLNFSTMAQNPVIFQSLPDVAWPGYQAVSTSHSTQQKIYSLNEGKSGGNSSHQDDEMKATSGKPSTNGPTTLVFDNSSKNLNFASSSMNGNRPSRSITSSAATSSLPLSSNASNYQQPPQFLHLQQQHGMLQQHPAMATLYKASSTTSNATTATKFFNGPPVFTQTQTQCKSSNQASQSKNSGKTPDSQVTSIITSTTPTFKNNSQEHGRVIQGHKQISFGGNYMSSLPPQGQQLLSNNQPLGSTATVAGIPPHGGNLKTNSQGSKVGPSMNTSQTQQTENSSAGTGQKSSPVCGRNVPSILSSCPSQLSELKY* 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1123 1093 MobiDBLite consensus disorder prediction 820 895 - -
Lja1g1123 1093 MobiDBLite consensus disorder prediction 944 969 - -
Lja1g1123 1093 MobiDBLite consensus disorder prediction 200 227 - -
Lja1g1123 1093 PANTHER TIC-LIKE PROTEIN 21 305 - -
Lja1g1123 1093 PANTHER TIC-LIKE PROTEIN 297 1093 - -
Lja1g1123 1093 MobiDBLite consensus disorder prediction 501 522 - -
Lja1g1123 1093 PANTHER PROTEIN TIME FOR COFFEE 21 305 IPR039317 GO:0042752
Lja1g1123 1093 PANTHER PROTEIN TIME FOR COFFEE 297 1093 IPR039317 GO:0042752
Lja1g1123 1093 MobiDBLite consensus disorder prediction 1001 1080 - -
Lja1g1123 1093 MobiDBLite consensus disorder prediction 125 246 - -
Lja1g1123 1093 MobiDBLite consensus disorder prediction 125 148 - -
Lja1g1123 1093 MobiDBLite consensus disorder prediction 839 895 - -
Lja1g1123 1093 MobiDBLite consensus disorder prediction 1001 1025 - -
Lja1g1123 1093 MobiDBLite consensus disorder prediction 1 22 - -
Lja1g1123 1093 MobiDBLite consensus disorder prediction 1 108 - -
Lja1g1123 1093 MobiDBLite consensus disorder prediction 440 481 - -
Lja1g1123 1093 MobiDBLite consensus disorder prediction 1035 1080 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1123 Lja-Chr1 11403167 11408187 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1123 - - vra:106757719 1015.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1123 1 11403167 11408187 Lja1g1123 1 11403167 11408187 ECH
Lja1g1123 1 11403167 11408187 Lja5g1977 5 25478416 25483746 PCT