Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1003 ATGATTCTCCACACAAGACAAGAGCCAATTAAAGTCGATGCGATCTTGTCCAGCATCATGTCATTGGTAGATGAAGAGAAAGGCCTTGGCAGCAGAAAGGAAGATTACACTCAAGATGGCACTGTGGACCTCAAAGGTGGGCCAGTTTTAAGATCAAAGACTGGATCATGGAAAGCTTGTTTCTTCATAGTAGGGTATGAATTGTTTGAGAGAATGGCTTACTACGGCATATCAACAAACTTGGTGGTGTATCTAGGGAAGAAACTCCATCAGGGTACTGTTACATCTTCAAACAACGTTAGCAACTGGGCTGGGGTAGTGTGGACAATGCCACTCGCAGGAGCTTACATAGCTGATGCCCATCTTGGCCGATATTGGACATTTGTAATTGCATCATGCATTTATCTTTGGGGAATGTGTTTGCTGACTCTAGCAGTTTCACTACCAGCACTGAGGCCGCCGGCATGTGCTCAAGGTGTGGAAAACCAAGATTGCCCACAGGCATCGCCATTGGCAAAAGGCGTTTTCTTCCTTGCCTTGTACATAATTGCAGTAGGCACTGGGGGAACAAAGCCCAACATTTCAACCATGGGGGCAGACCAATTTGACGAGTTCGAGCCTAAAGAGAGAACCCATAAGTTTTCCTTCTTTAATTGGTGGGTTTTTAGTATCCTTATCGGTGTCCTTTTCGCCGCTACTTTCTTGGTTTATATCCAAGACAATGTTGGTTGGGGCGTTGGATATGGCCTTCCAACAATTGGGCTCGCTTTTTCAGTATTGTTGTTTCTGGTAGGAACTCCATTTTATAGGCACAAATTGCCCTCAGGAAGCCCTATAACAACAATGCTTCAGGTTTTTGTTGCTGCTGGGATAAAGTGGAAAGCAGTTGTCCCTGATAATCCAAAACAGCTACATGAGCTGAGTATGGAAGAGTATGTAACTAGCAGGAGAAACAGAATTGATCACACATCATCATTCAGATTCCTAGATAGAGCGGCTATAAAGACTGGAAAAACTTCTCCGTGGATGCTTTGTACAGTGACCCAAGTAGAGGAAACCAAGCAAATGACAAAAATGATTCCTATTTTGATCACTACAATTATTCCATGCAGCTTGGCAATTCAAACAAGCACACTATTCATTACCCAAGGCACCACGCTAGACAGGAGAATGGGACCCCATTTTGAAATCCCTCCGGCAGGTCTTTCAGCAGTTATGACTGTTTTCACGTTGATAAGTATCCCAATCTATGACTGTGCTTTTGTTCCGGCGATGCGTCAGTACACAAAGAACCCCAGAGGGATCGCAATGCTTCAGAGACTAGGAGCTGGTCTTGTGATGTACATAATTACAATGGTCACTGCATGGTTGAGTGAGAGGAAGAGACTCAGTGTTGCCAGAGAATACAACCTTTTAGGCCAGCATGATAAGATTCCTCTTACGATTTTTATCCTCCTCCCTCAGTTTGCCTTGACAGGGGTTGCTAATAACTTCGTCGATATTGCCATGTTGGACTTCTTCTATGATCAAGCACCAGAAGGCATGAAAAGCCTTGGAATATCATATTCCACAACCAGTACAGCTTTAGGATGTTTTTTCAGTAGCTTTCTGCTCTCAACTGTGGCTGATCTAACCAAGAAACACGGTCACAAGGGTTGGGTTTTGGATAATCTAAACGTCTCCCACTTAGATTATTATTATGCATTCATGGCGATACTGAGCGTAGCCAACTTCCTTTGCTTTCTGGTTGCTGCCAAGCTGTTTGCCTATAATGTTGATGTAATACACAAAAAATCAGGCTTGGAGATGAACCATGCATCTCTGGACAGTGCTAGAATATGCCAAAGCAGTGAAAGCACAGCACAACCAGATGCCAAGTACTAG 1884 0.4384 MILHTRQEPIKVDAILSSIMSLVDEEKGLGSRKEDYTQDGTVDLKGGPVLRSKTGSWKACFFIVGYELFERMAYYGISTNLVVYLGKKLHQGTVTSSNNVSNWAGVVWTMPLAGAYIADAHLGRYWTFVIASCIYLWGMCLLTLAVSLPALRPPACAQGVENQDCPQASPLAKGVFFLALYIIAVGTGGTKPNISTMGADQFDEFEPKERTHKFSFFNWWVFSILIGVLFAATFLVYIQDNVGWGVGYGLPTIGLAFSVLLFLVGTPFYRHKLPSGSPITTMLQVFVAAGIKWKAVVPDNPKQLHELSMEEYVTSRRNRIDHTSSFRFLDRAAIKTGKTSPWMLCTVTQVEETKQMTKMIPILITTIIPCSLAIQTSTLFITQGTTLDRRMGPHFEIPPAGLSAVMTVFTLISIPIYDCAFVPAMRQYTKNPRGIAMLQRLGAGLVMYIITMVTAWLSERKRLSVAREYNLLGQHDKIPLTIFILLPQFALTGVANNFVDIAMLDFFYDQAPEGMKSLGISYSTTSTALGCFFSSFLLSTVADLTKKHGHKGWVLDNLNVSHLDYYYAFMAILSVANFLCFLVAAKLFAYNVDVIHKKSGLEMNHASLDSARICQSSESTAQPDAKY* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1003 627 Gene3D MFS general substrate transporter like domains 29 595 IPR036259 -
Lja1g1003 627 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 39 601 IPR000109 GO:0016020|GO:0022857|GO:0055085
Lja1g1003 627 PANTHER PROTEIN NRT1/ PTR FAMILY 5.2-LIKE 39 601 - -
Lja1g1003 627 Pfam POT family 125 554 IPR000109 GO:0016020|GO:0022857|GO:0055085
Lja1g1003 627 SUPERFAMILY MFS general substrate transporter 50 585 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1003 Lja-Chr1 9957918 9960428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1003 34 596 Organic Solute Cotransporters AT5G46040 58.230 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1003 - - lja:Lj1g3v4515810.1 1265.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1003 1 9957918 9960428 Lja1g1003 1 9957918 9960428 ECH
Lja1g1003 1 9957918 9960428 Lja6g0043 6 828288 830878 PCT