Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0916 ATGAAAACCATAGATATCTTCTGTGCATCACAGGCCTCCACAGCCATATGTCTCAGCACGGATCAACCCTCCTCCTCCTCCTCCTCCATCTCCTCCTCTTCCAACACCATCCAATTTGGTGGCAGAGCCATTGACCGCCACAACCCCATCATCACAGATCCTAAAAGAACCCCTTCCAGAGACTTCACCGCTCCCAGTTCTTCCTCTCAGCCACCACCACTCACAGACCCCAAACCTTCCCATGATCCCCATAAGGCCAAGAAAAACACCATTCCAAAACCAGGTGAGAGGAAAAAGAAAAAAGCAACAAAGGGTCATGATGATGAGAAGAAGAAGAAGAAATGTGAAGCTGCAGCAGAAAAGATAACTGAACACATCACCAACAATTTCTCTTGTAAACCAATTGACAGTGTTCTGAGGAGGAGCTGGGTTAAGCCACCTTCTGATTTGAATACACCTCCTGGTTCTTCAAGATATTTGCTTGGTGGCTCTGCAGCTTCCTTTGATTTTGACCCTGTTCTGGCTTTAACCAAAGTTGATAACAAAAAAGCTGAAGTTGTTCATGGAGATGAAACCAATCATTCGTCTAAACGCTCTGGCTCCTCTGTTCCAAAATCTGCTTCCTCAGACCAGGTTGTGGTCTTGAGGGTTTCTCTGCACTGCAAAGGTTGTGAAGGGAAAGTGAGAAAACACCTCTCTAGAATGCAAGGTGTTACATCCTTCAATATAGACTTTGCTGCAAAGAAGGTTACAGTAGTTGGCGATGTGACTCCATTGAGTGTATTGGCAAGCATATCAAAGGTGAAGAATGCTCAATTTTGGCCACTATCTGCTTCAGCAATTGGATCAGGTGCCACAGAAATTAAGAAAACAAATTTGATCTAA 885 0.4452 MKTIDIFCASQASTAICLSTDQPSSSSSSISSSSNTIQFGGRAIDRHNPIITDPKRTPSRDFTAPSSSSQPPPLTDPKPSHDPHKAKKNTIPKPGERKKKKATKGHDDEKKKKKCEAAAEKITEHITNNFSCKPIDSVLRRSWVKPPSDLNTPPGSSRYLLGGSAASFDFDPVLALTKVDNKKAEVVHGDETNHSSKRSGSSVPKSASSDQVVVLRVSLHCKGCEGKVRKHLSRMQGVTSFNIDFAAKKVTVVGDVTPLSVLASISKVKNAQFWPLSASAIGSGATEIKKTNLI* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0916 294 SUPERFAMILY HMA, heavy metal-associated domain 211 268 IPR036163 GO:0046872
Lja1g0916 294 PANTHER COPPER CHAPERONE 1 290 - -
Lja1g0916 294 MobiDBLite consensus disorder prediction 19 113 - -
Lja1g0916 294 Pfam Heavy-metal-associated domain 215 267 IPR006121 GO:0046872
Lja1g0916 294 PANTHER OS08G0405700 PROTEIN 1 290 IPR044526 -
Lja1g0916 294 ProSiteProfiles Heavy-metal-associated domain profile. 211 268 IPR006121 GO:0046872
Lja1g0916 294 MobiDBLite consensus disorder prediction 185 209 - -
Lja1g0916 294 MobiDBLite consensus disorder prediction 19 41 - -
Lja1g0916 294 CDD HMA 214 267 IPR006121 GO:0046872
Lja1g0916 294 Gene3D - 208 272 - -
Lja1g0916 294 MobiDBLite consensus disorder prediction 91 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0916 Lja-Chr1 8986198 8988591 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0916 - - gmx:100810015 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0916 1 8986198 8988591 Lja5g2742 5 54375619 54378850 PCT