Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0537 ATGTCGCTGGTAACAGAAGAAATCAGAGGCAGATCAGAGATTTACCATGGCGACGAACTCTGCCAAGTCAAATCCAAGGATCTGTTGAAGGAAATCGCTCTTCCCAATGGCTTACTTCCACTGAAAGACATGGAGGAGTGTGGAATCAACAGGGAATCTGGATTGGTGTGGCTGAAGCAGAAGAAGAGCACCACGCACAAGTTCGACAAGATCGGGAAGCTTGTTTCGTACGGGCCGGAGGTGACTGCTCAGGTTGAGAAAGGGAAGATCAAGAAGCTCACTGGTGTGAAGACGAAGGAGCTTCTGCTTTGGGTGTCGCTGAGTGATATCTACACGGATGAACCGCCGACAGGGAAGATCACGTTCAAGACGCCGGCTGGGCTTTACAGGTCGTTTCCTGTGTCTGCTTTTGAGATTGTGGAAGAGAAATCTTGTGTGGAGGAGAAGAGTAAGAATCATGAGGTTGTTGGAGATGGTGTTGGTGGAGGAGTCAAAGAGGTTTGA 504 0.4921 MSLVTEEIRGRSEIYHGDELCQVKSKDLLKEIALPNGLLPLKDMEECGINRESGLVWLKQKKSTTHKFDKIGKLVSYGPEVTAQVEKGKIKKLTGVKTKELLLWVSLSDIYTDEPPTGKITFKTPAGLYRSFPVSAFEIVEEKSCVEEKSKNHEVVGDGVGGGVKEV* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0537 167 PANTHER PLANT/F25P12-18 PROTEIN 2 151 - -
Lja1g0537 167 Gene3D - 9 149 IPR036758 -
Lja1g0537 167 SUPERFAMILY At5g01610-like 4 143 IPR036758 -
Lja1g0537 167 Pfam Protein of unknown function, DUF538 26 138 IPR007493 -
Lja1g0537 167 PANTHER T31J12.3 PROTEIN-RELATED 2 151 IPR007493 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0537 Lja-Chr1 4902290 4903126 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0537 - - vra:106757663 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0537 1 4902290 4903126 Lja1g0537 1 4902290 4903126 ECH
Lja1g0537 1 4902290 4903126 Lja5g1361 5 13639369 13640475 PCT