Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0534 ATGATCGCTTCCAGCATTATTAGCATTTGTGCCATGAAACCATCCTCTAGGATCCTCATTGGTTTCAAGAATTCATCATCGTTTCTTGCAAGATGTCACCGTACCCTTACTCTATCTCTATCTAACTCCAACCCTTCTCTTCACAACAACAGAATGCACTGCATCTTCCCTTGTAGAATGCTAAAGTTTGGACGCATAATGAGTGGTGCCCAGAATTTGTTTGGGTTACCTTCTTCGAGTTTTCGCCGGAATAGTATGAGAGTAACGGGAACAAAAGAGGGTGTCTCTCCCATTTCTGGGGTTGCCTTCAAGGCTCGAGGTTTCTCTGGCTCCATAGAGACCAATGCCAATGAGAACAATGGTGAGAGGGTTTGCGTGAAAGATAGCAAGAATGTGAAGACTTTGGTCGAAGGAAATGACGAGAATGGTGAGGGAGAGGAAGAGTCAAGATCAGAAGATGGTGAGGAAGATGTTAAGGCGGAAACTTCAGGTGGTTTGAAGAATGGGTCTGAGTCAGAGGACAGTGATGAGGAGGAAGAGACGGAGGTGGAAAGAGAAGCGTGGGCGTTATTGCAGAACGCGCTTGTGACGTATTGTGACAACCCTATTGGAACGGTGGCTGCAAAAGTTTCAGGTGACCAGCAAACATTGAATTACGATCAGGTGTTTATCAGGGATTTCATCCCTTCTGCCCTTGCTTTCTTGCTCAAGGGAGAAAGTGAGGTTGTCAAGAACTTTCTTGTTCACACCTTGCAACTCCAGAGTTGGGAGAAAACAGTGGACTGCCATAGCCCAGGAGCGGGCTTGATGCCTGCTAGTTTCAAAGTTGAAACTATAGAAATTTCTGAAAATGAAAGAGAAGAAGCTTTGGATCCTGATTTTGGGGAATCAGCTATTGGTCGTGTTGCTCCTGTGGATTCAGGGTTGTGGTGGATCATCCTGCTGCGAGCTTATGGGAAGCTCACTGGTGACTACAGCTTACAAGAACGGTTGGACGTTCAAACAGGCCTACAAATGATCCTTAGCTTGTGTTTAACGGATGGCTTTGATATGTTTCCTTCTCTGTTGGTAACTGATGGATCTTGCATGATAGACAGGAGGATGGGTATTCATGGTCACCCTCTTGAGATTCAAGCATTATTTTACTCAGCTCTTCGCTCTGCCCGTGAGATGGTTGACGTAGATAAGGGTTCCGAGCATCTGGTTGGAGAAATTTACAATAGACTTAGTGCACTATCATTCCACATTAGAGAATATTATTGGTTGGACATGAGAAAGATAAATGAGATATACAGGTACAAAACAGAAGAGTACTCATTGGAAGCCACTAACAAATTCAACATCTATCCAGAACAAATTCCTATGTGGCTAATGGATTGGATTCCAGAGGAAGGTGGATATTTGGTAGGGAACCTGCAGCCAGCTCACATGGACTTCAGGTTTTTCATGCTTGGAAATCTCTGGTCCATCGTTTCGTCTTTGAGTACCCCAAGACAGAGCAATGCTATTTTGAATCTCATTGAAGCTAAATGGGATGATCTCGTGAGCGACATGCCTCTCAAGATATGTTATCCTGCCTTGGAGAATGAAGAATGGCGCGTAATTACAGGCAGCGACCCTAAGAACACCCCTTGGTCATATCACAATGGTGGATCTTGGCCAACCCTTTTGTGGCAGTTTACACTGGCATGCATCAAAATGGGGAGAATTGAACTAGCTCAGAAGGCTGTTGCTTTGGCTGAGCAAAGGTTGCCATTTGATTCATGGCCTGAATACTATGACACCCGCACAGGAAGATTTATTGGAAAACAGGCCAGGCTATATCAAACATGGACATTATCTGGGTTCCTTGCATCTAAGATGCTTTTGAAGAATCCTGAATTGGCAAACTTGCTATGCTGGGATGAAGATTTTAAGATTCTTGAGTCATGTGTTTGTGTACTTAATAAGAAGAATGGCAAGAGAAAATGCTCCCGCGTAGCTGCAAAGTCTCATGTTCTCGTTTGA 2007 0.4425 MIASSIISICAMKPSSRILIGFKNSSSFLARCHRTLTLSLSNSNPSLHNNRMHCIFPCRMLKFGRIMSGAQNLFGLPSSSFRRNSMRVTGTKEGVSPISGVAFKARGFSGSIETNANENNGERVCVKDSKNVKTLVEGNDENGEGEEESRSEDGEEDVKAETSGGLKNGSESEDSDEEEETEVEREAWALLQNALVTYCDNPIGTVAAKVSGDQQTLNYDQVFIRDFIPSALAFLLKGESEVVKNFLVHTLQLQSWEKTVDCHSPGAGLMPASFKVETIEISENEREEALDPDFGESAIGRVAPVDSGLWWIILLRAYGKLTGDYSLQERLDVQTGLQMILSLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRSAREMVDVDKGSEHLVGEIYNRLSALSFHIREYYWLDMRKINEIYRYKTEEYSLEATNKFNIYPEQIPMWLMDWIPEEGGYLVGNLQPAHMDFRFFMLGNLWSIVSSLSTPRQSNAILNLIEAKWDDLVSDMPLKICYPALENEEWRVITGSDPKNTPWSYHNGGSWPTLLWQFTLACIKMGRIELAQKAVALAEQRLPFDSWPEYYDTRTGRFIGKQARLYQTWTLSGFLASKMLLKNPELANLLCWDEDFKILESCVCVLNKKNGKRKCSRVAAKSHVLV* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0534 668 Gene3D - 202 614 IPR012341 GO:0005975
Lja1g0534 668 PANTHER - 5 668 IPR024746 GO:0033926
Lja1g0534 668 MobiDBLite consensus disorder prediction 132 184 - -
Lja1g0534 668 PANTHER ALKALINE/NEUTRAL INVERTASE 5 668 - -
Lja1g0534 668 SUPERFAMILY Six-hairpin glycosidases 175 618 IPR008928 GO:0005975
Lja1g0534 668 Pfam Alkaline and neutral invertase 187 626 IPR024746 GO:0033926
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0534 Lja-Chr1 4887091 4890446 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0534 - - gmx:100812691 975.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0534 1 4887091 4890446 Lja5g1356 5 13594030 13598182 ECH
Lja1g0534 1 4887091 4890446 Lja1g0534 1 4887091 4890446 ECH
Lja1g0534 1 4887091 4890446 Lja5g1356 5 13594030 13598182 PCT