Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0416 ATGGGAAACCACATATCATCATTTCCAGCTTCAGATGCCACAGGGAAAATCGTTTACTGTGATGGCTCAGTTCAAGAATTTGACCAACCTCTAACAGTGGCAGAGCTCATGCTAGAGCACCCACAACAGGTAGTGGTGGAGTTCCATTCAGCATTGAACCACCAGAAAAGACCAACACCATTGCCAGCTGACAAGAAGCTAGAGATGAAGAAAACATATGTAATGCTTCCGATGAAGCGAGGGAAGCCAGTGGGGCTGAGCGGTGAAGATTGCCACCGCGTTCTATCCATCGTTAACTCTTCTCTGCATTCCAACTATCTCATGTGTTCAGGCTTTCTTCCTTGGATTGCCAGAGTATTTAAAACAGAGTCCCCTGCAAATGGTGTGGCTGAAACCTTGCAGATAAAGGAAGAAAGGTACGACTTTTCTGAGTTTTTGCCAGAGATGATTGAAGAGAGGCCAGAATACATGAGTAGGCAGTTGTCAGGGAAGGAGTGGAAGCCTAGCTTGGACACCATTAAGGAGAAGAAGATTAAGAAAAAACTATCTCGCTGGTTTTTCCTCAAAAGTTTTATTGGTACAAGGATTTAA 591 0.4433 MGNHISSFPASDATGKIVYCDGSVQEFDQPLTVAELMLEHPQQVVVEFHSALNHQKRPTPLPADKKLEMKKTYVMLPMKRGKPVGLSGEDCHRVLSIVNSSLHSNYLMCSGFLPWIARVFKTESPANGVAETLQIKEERYDFSEFLPEMIEERPEYMSRQLSGKEWKPSLDTIKEKKIKKKLSRWFFLKSFIGTRI* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0416 196 PANTHER DUF4228 DOMAIN PROTEIN-RELATED 1 184 - -
Lja1g0416 196 Pfam PADRE domain 1 175 IPR025322 -
Lja1g0416 196 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 1 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0416 Lja-Chr1 3668678 3669431 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0416 - - gmx:100527719 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0416 1 3668678 3669431 Lja1g0416 1 3668678 3669431 ECH
Lja1g0416 1 3668678 3669431 Lja5g1223 5 12246710 12247663 PCT