Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0410 ATGCGAGGAGGACGTTCTAGAAAACAAAGCGTGCTTCCGGTAGACGATGGATCCAAGGGCATTTGGAGGAAACTTGTGGGGTCCATGAGACCCTTGCACATCCATAGAAGCCCATCGCAAGAATCAATTTCTCATTCTTCTCCACCCAACACCACCACCACTCTTCCGCCAGCTTCTCTATCGCTGTTGAAAGGTAAGTCCAAGAGCTGCATGAATTCCCCAACGGAAGAGGAGCCTTATTCACCGTCTCCGCCGAGCACACGTTATGCCTCAGCAGTTGGTCTCAATGAACTCGTGCAGAGTAGTGATGATGACTGCGAGAAACAGGAGGTGAAGGTGATTGTGGAGGATGAGGACGACGATGATGATGAGGAATATTTTGATGGGGATGAACAGATTGATGACAAGGCTGAGGAATTTATTGCTCAATTCTACCAGCAAATGAAGTTGCAGCGCTTGGATTCTACGGATCGTCGTTACAACGAGCGAAGTGAGAGATCATTAGGGGTATGA 513 0.4854 MRGGRSRKQSVLPVDDGSKGIWRKLVGSMRPLHIHRSPSQESISHSSPPNTTTTLPPASLSLLKGKSKSCMNSPTEEEPYSPSPPSTRYASAVGLNELVQSSDDDCEKQEVKVIVEDEDDDDDEEYFDGDEQIDDKAEEFIAQFYQQMKLQRLDSTDRRYNERSERSLGV* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0410 170 PANTHER COTTON FIBER PROTEIN 2 164 - -
Lja1g0410 170 Pfam Cotton fibre expressed protein 130 164 IPR008480 -
Lja1g0410 170 MobiDBLite consensus disorder prediction 32 88 - -
Lja1g0410 170 MobiDBLite consensus disorder prediction 35 88 - -
Lja1g0410 170 PANTHER COTTON FIBER PROTEIN 2 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0410 Lja-Chr1 3596757 3597269 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0410 - - lja:Lj1g3v4863060.1 163.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0410 1 3596757 3597269 Lja5g1210 5 12109190 12110190 PCT