Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0110 ATGTTGGAGAAAGTGGGAGAGTTTTATAACATGGACAAGGTTATAGAAGAATTTGAGTCACTCACAAAGGATGCAGGAAAGGTTCAGAGAGAAACTCTCAAGAGAATTTTGGAGGATAATGCATCAGCTGAGTATTTGCAGAATTTGGGCCTTAATGGGAGAACTGACCCTGATAGTTTCAAGGCCTGTGTTCCCATGGTTACACACAAAGATTTGGAACCTTATATCTACAAAATCATTGATGGCGAATCTTCTTCTATTCTCACTGGAAAACCCATCACAACTATGTCTTTAAGCTCTGGCACTACTCAGGGGAAGCCAAAGTATCTCCCATGGAATGATGAGTTGTTTGAAACCACCATGCAGATTTATAAGACCTCTTTTGCCTATAGGAACAGAGAGTTTCCTATGAAAAATGGGAAGGCTTTAAGCTTTATCTATGGTAGCAAACAGTTCAAAACAAAAGGGGGTCTGGTAGCAAGAACTGCTACAAGCAATTTGTTTCGCAGTCCGGGTTACAAGCATGCAATGAAGGCATTGCAATCTCAATGCTGCAGCCCAGATGAAGTGGTATTTGGTCCTGATTTTTTCCAATCCTTATACTGCCACTTGCTATGCGGCCTCATTTTCCGCGAGGAAGTTCAATTAGTGTCTTCTACATTTGCTCATAGCATCGTCCATGCTTTCAGAACCTTTGAACAAGTGTGGGAAGAGCTCTGCACTGATATCAGAGAAGGGGTTCTCACAAGCAGAGTTACAGTGCCATCTATTAGAATGGCCATGTCTAAAATACTCAAACCAAATCCAGAACTAGCAAACTTGATTCACAAGGAATGTGTTGGGTTGAGCTATTGCAACTGGTATGGTTTGATACCAGAGCTTTTTCCCAATGCAAAGTACATTTATGGCATCATGACAGGGTCAATGGAGCCATATTTGAAGAAACTGAGGCACTATGCAGGGGAGATGCTGCCTTTGTTGACTGCTGATTATGGATCTACTGAAGGTTGGATTGCTGCAAATGTGAACCCAAAACTTCCACCTGAAATGGCTACTTATGCTGTGTTGCCCCATATTGGTTACTTTGAGTTCATTCCATTGACAGAGCTAGAGAATGATTTTTTCCTTTGCATTGATCCAAATCCAGTAGGACTCACTGAAGTCAAGATAGGTGAAGAGTATGAAATTGTTATGACCAATCCAGCAGGTTTGTACCGGTATAGGCTAGGAGATGTGGTAAAGGTGATGGGGTTCCATAACTCGACTCCGGAACTCAAATTTGTTCGCCGGAGCAGCCTTCTGTTGAACATTAACATTGACAAGAACACTGAGAAGGATTTGCAGCTAGCTGTGGAAGCAGCTGCCAAATTTTTAGCAGAGGAGAGAGTGGAAGTTGTTGACTTCACTAGCCATGTTGATTTAACCACAGAACCAGGTCACTATGTAATTTTCTGGGAAATCAGTGGTGAAGCAAGTGAAAAACTACTCAGTGAATGCTGCAATTGTTTAGACAAGTCTTTCATTGATGCGGGCTACACTAGTTCTCGCAAAGTTAACTGCATTGGGCCCCTTGAACTCCGAGTTGTTAGGAGGGGAACATTCCAGAAGGTTCTTGATCATTACCTTGGATTAGGAACCGCTGTTAGTCAGTACAAGACACCAAGATGTGTTGGTTCTTCAAACAGCAGAGTGTTGCAAATCTTGTGTGACAATGTTGTTAAGAACTATCTCAGTACTGCTTTCAATTGA 1749 0.4208 MLEKVGEFYNMDKVIEEFESLTKDAGKVQRETLKRILEDNASAEYLQNLGLNGRTDPDSFKACVPMVTHKDLEPYIYKIIDGESSSILTGKPITTMSLSSGTTQGKPKYLPWNDELFETTMQIYKTSFAYRNREFPMKNGKALSFIYGSKQFKTKGGLVARTATSNLFRSPGYKHAMKALQSQCCSPDEVVFGPDFFQSLYCHLLCGLIFREEVQLVSSTFAHSIVHAFRTFEQVWEELCTDIREGVLTSRVTVPSIRMAMSKILKPNPELANLIHKECVGLSYCNWYGLIPELFPNAKYIYGIMTGSMEPYLKKLRHYAGEMLPLLTADYGSTEGWIAANVNPKLPPEMATYAVLPHIGYFEFIPLTELENDFFLCIDPNPVGLTEVKIGEEYEIVMTNPAGLYRYRLGDVVKVMGFHNSTPELKFVRRSSLLLNINIDKNTEKDLQLAVEAAAKFLAEERVEVVDFTSHVDLTTEPGHYVIFWEISGEASEKLLSECCNCLDKSFIDAGYTSSRKVNCIGPLELRVVRRGTFQKVLDHYLGLGTAVSQYKTPRCVGSSNSRVLQILCDNVVKNYLSTAFN* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0110 582 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 1 582 IPR004993 -
Lja1g0110 582 Coils Coil 11 31 - -
Lja1g0110 582 Pfam GH3 auxin-responsive promoter 17 559 IPR004993 -
Lja1g0110 582 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE 1 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0110 Lja-Chr1 945728 950100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0110 18 579 EF-hand Containing Proteins AT1G23160 39.757 4.07e-143 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0110 K14506 - gmx:100794598 1033.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0110 1 945728 950100 Lja1g0110 1 945728 950100 ECH
Lja1g0110 1 945728 950100 Lja3g1795 3 20246146 20251214 PCT