Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0039 ATGGAAGAAGACCCAAACCCCCCAAAGGGCCAAAACCAACATCACCATCTTCCCCCTCCCAACAAGATACAAATGAACAATCACAAAGCTTCTCCTTCTCCCTACGGTGGTGGTGGTGGTGGTTCTTCTCCCAAACGTGCAGCCTGCACCTTCATCACCGTCTTTCTTCTAGCCGTTGGAATCACTCTGCTCGTCCTCTGGCTCGTCTACCGTCCCCACAAGCCCCGCTTCACGGTGGTCGGCGCTGCCGTCTACGCCCTCAACACAACCTCACCGCCGCTCTTGTCCGCCGCCTTGCAGTTCAACGTCCTCATAAGAAACCCCAACAAGCGTGTCTCTATTTACTATGACAGGTTCTCTGCCTTCGTGTCCTACAGGAACCAACCCATCACACAGCAGGTTTTGCTGCCGCCGCTGTTCCTGGAGAAGCACAGCCAAGTTTCGCTGTCGCCGGTGATCGGTGGCACGCCGATGCCGGTGACGGTGGAGGTGGCAAATGGGTTGGCGATGGACGAGAGTTATGGGGTGGTGGGTCTGAAACTGGTTTTTCTGGGCAGGGTGAAGTGGAAGGCAGGGGGCCTAAGAACATGGCATCATGGGCTTTATGTAAAGTGTGATTTGTTGGTGGGTTTGAAGAAAGGTTTTGTGGGTCAAGTTCCTCTGCTCCAAGCTCAAGCTTGTGATGTGGATCTATGA 696 0.5431 MEEDPNPPKGQNQHHHLPPPNKIQMNNHKASPSPYGGGGGGSSPKRAACTFITVFLLAVGITLLVLWLVYRPHKPRFTVVGAAVYALNTTSPPLLSAALQFNVLIRNPNKRVSIYYDRFSAFVSYRNQPITQQVLLPPLFLEKHSQVSLSPVIGGTPMPVTVEVANGLAMDESYGVVGLKLVFLGRVKWKAGGLRTWHHGLYVKCDLLVGLKKGFVGQVPLLQAQACDVDL* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0039 231 MobiDBLite consensus disorder prediction 1 41 - -
Lja1g0039 231 Pfam Late embryogenesis abundant protein 103 205 IPR004864 -
Lja1g0039 231 MobiDBLite consensus disorder prediction 17 31 - -
Lja1g0039 231 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN 42 230 - -
Lja1g0039 231 PANTHER OS05G0367900 PROTEIN 42 230 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0039 Lja-Chr1 414731 416026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0039 11 209 EF-hand Containing Proteins AT5G21130 20.792 3.09e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0039 - - cam:101499150 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0039 1 414731 416026 Lja1g0039 1 414731 416026 ECH
Lja3g1692 3 18766885 18768343 Lja1g0039 1 414731 416026 ECH