Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1378 ATGTTCCGCCTTAGAAAGCAAACCCAGAATCAAGTGGACAATGACCCCTCTTACAAACAATCAAAGGTGGCTGAACTGAGGGCAGCTCTGGGGCCATTATCTGGGCGAAGTCTAAAGTATTGCACAGACGCATGTCTCAGGAGATATTTAGAAGCCAGGAACTGGAACCTTGATAAAGCCAAGAAAATGTTGGAAGAAACCCTCAAATGGAGATCCACTTACAAGGCCGAGGAAATCCGTTGGCCTGAAGTTGCACACGAGGGTGAAACTGGAAAAGTGTCAAGGGCAAATTTTCACGATCGTTCTGGAAGAACTGTGCTTATCATGAGGCCTGGAATGCAGAACACGGCATGTCCAGAAGATAATATCAGGCATTTGGTATACCTCATGGAGAATGCTATCCTCAATCTCCCCGAAGGTCAAGAACAGATGTCATGGCTCATAGATTTCACTGGATTTTCACTCAACACTAATGTTTCTGTCAAAACAGCTCGTGAAATCATCCACATCTTACAGAATCACTATCCTGAAAGGCTTGGTATTGCTTTTCTCTTTAGCCCACCAAGGATATTTCAAGCTTTTTGGAAGGCTGTGAGATACTTCTTGGATCCCAAGACATTCCAGAAGGTGAAATTTGTTTATCCTAAGGACAAGGAGAGTGAAGAACTGATGAAATCGCTGTTTGACGTGGAAAATCTTCCGAATGAGTTTGGAGGAAAAGCGACATTGAAGTATGATCATGAAGAGTTTTCAAGGATGATGATAAAAGATGATGTAAAAACTGCTAAATTCTGGGGAGTTGATGACAAACCATTCATCAGAAGAGGCAAGATGATAAAAGCCGTATTGGTGATGAACACGCAGGGGAGGCCCCGTCTTGCAAAATTTTATGAATTTCGGCAGGAACTAATACGTAATGTGTTTTCAGTCTTGTGCAGTAGAGCTGAAAATGTTAGTAGTTTCGTGGATGCCGAGTCCATCTTTGGTCAGGATGCTCGCCTTGTCTACAAGCACTATGCAACTTTGTACTTTGTGTTCATATTTGATAGTGTTGAAAATGAGCTGGCTATGCTTGACTTAATACAAGTCTTTGTTGAAACACTGGACAAATGCTTCAGAAATGTTTGTGAACTTGACGTAGTGTTCAACTATAGCAAGATGCATTCTATTCTAGATGAGATTATCTTTGGAGGCCAGGTTTTGGAAACAAGTTCAGCCGAGGTTATGAAGGCTATTGAAGAGTTGTCAAGGCTAGAAGCGACCTCCAATGCTATCAACCTTGTATCAAAATCTGTTTCTGGTTGGAGGACGCGGTAG 1317 0.4222 MFRLRKQTQNQVDNDPSYKQSKVAELRAALGPLSGRSLKYCTDACLRRYLEARNWNLDKAKKMLEETLKWRSTYKAEEIRWPEVAHEGETGKVSRANFHDRSGRTVLIMRPGMQNTACPEDNIRHLVYLMENAILNLPEGQEQMSWLIDFTGFSLNTNVSVKTAREIIHILQNHYPERLGIAFLFSPPRIFQAFWKAVRYFLDPKTFQKVKFVYPKDKESEELMKSLFDVENLPNEFGGKATLKYDHEEFSRMMIKDDVKTAKFWGVDDKPFIRRGKMIKAVLVMNTQGRPRLAKFYEFRQELIRNVFSVLCSRAENVSSFVDAESIFGQDARLVYKHYATLYFVFIFDSVENELAMLDLIQVFVETLDKCFRNVCELDVVFNYSKMHSILDEIIFGGQVLETSSAEVMKAIEELSRLEATSNAINLVSKSVSGWRTR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1378 438 Gene3D - 3 268 IPR036865 -
Lele56g1378 438 CDD AP3_sigma 278 417 IPR027155 GO:0006896|GO:0030123
Lele56g1378 438 SUPERFAMILY SNARE-like 278 416 IPR011012 -
Lele56g1378 438 Pfam CRAL/TRIO, N-terminal domain 41 66 IPR011074 -
Lele56g1378 438 ProSitePatterns Clathrin adaptor complexes small chain signature. 334 344 IPR000804 GO:0006886|GO:0016192|GO:0030117
Lele56g1378 438 SUPERFAMILY CRAL/TRIO domain 81 260 IPR036865 -
Lele56g1378 438 Coils Coil 401 421 - -
Lele56g1378 438 SMART sec14_4 87 242 IPR001251 -
Lele56g1378 438 SUPERFAMILY CRAL/TRIO N-terminal domain 6 82 IPR036273 -
Lele56g1378 438 PANTHER GH16843P 8 270 - -
Lele56g1378 438 Pfam Clathrin adaptor complex small chain 278 418 IPR022775 -
Lele56g1378 438 Gene3D - 278 432 - -
Lele56g1378 438 FunFam Phosphatidylinositol transfer protein 3 2 272 - -
Lele56g1378 438 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
Lele56g1378 438 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Lele56g1378 438 Pfam CRAL/TRIO domain 97 239 IPR001251 -
Lele56g1378 438 CDD SEC14 99 240 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1378 Lele-ChrLele56 16897523 16902507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1378 46 235 Acyl Lipid Metabolism Gene Families AT1G55840 25.714 2.46e-10 59.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele56g1378 56 16897523 16902507 Lele56g1378 56 16897523 16902507 ECH
Lele54g0055 54 464408 466709 Lele56g1378 56 16897523 16902507 hybridization