Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0547 ATGGCTCTCTCTCGCTTTGCTTCTTCTTCTTCCTCCTCTAGATCCAGTCTTCTCATACCAATCTCATCTGCATTCTCCTCCGCCCCTTCTTTCCGCCGTTCGATCTCCTCTGCCGCCGATGACTCCTCCACTCTCACCATTGAAACCTCTCTTCCATTCACCGCCCACAATTGCGACACTCCTTCGCGCTCCGTCGACACAAATCCCAAGCAACTCATGTCCTTCTTCCGCGACATGGCCGTCATGCGACGGATGGAGATAGCCGCAGATTCCCTCTACAAGTCTAAGCTCATCCGAGGGTTCTGTCACTTGTACGATGGCCAGGAAGCTGTAGCCGTCGGCATGGAGGCTGCCATTACCAAGAAGGATTGCATAATAACATCTTATCGTGATCATTGTACCTTCCTGGGTCGCGGTGGAACCCTGTTGGAGATATTTTCGGAGCTCATGGGTCGTCGAGATGGGTGCGCGAAAGGAAAGGGTGGCTCTATGCACTTCTATAGGAAGGAAGCTGGGTTCTATGGCGGTCACGGGATTGTTGGGGCTCAGGTACCTCTGGGGTGTGGATTAGCTTTTGCTCAGAAGTACTCTAAGGATGAAAATGTCACCTTCGCTTTGTACGGGGATGGTGCGGCGAATCAGGGGCAGTTGTTCGAGGCGCTAAACATAGCGGCGCTTTGGGATCTCCCTGCCATTTTGGTCTGCGAGAATAATCACTACGGGATGGGGACGGCAGAATGGAGAGCTGCTAAGAATCCTGCTTATTACAAGCGTGGGGACTATGTTGCTGGGTTGAAGGTAGATGGCATGGATGTTCTTGCTGTAAAGCAGGCATGCAAATTTGCAAAGGAGTATGCTTTGAAGAATGGGCCCATTGTTCTTGAATTGGACACCTACAGGTACCATGGCCATTCCATGTCTGATCCTGGTAGCACATATCGTACACGTGATGAGGTTTCTGGCGTGAGACAGGAGCGTGATCCAATTGAGAGAGTGAGAAAGCTGTTATTGAAACATGAGATTGCTGCTGAAAAGGAACTAAAGGACATTGAAAAGGAAGTCAAAAAAGAGGTTGATGAAGCTATAGCTAAAGCAAAGGAGAGTCCATTGCCGGAGCCATCTGAATTATTTACCAATGTATATGTTAATGGTTTAGGGACTGAGGCATGTGGGGCTGACAGAAAGGAAGTAAGAGTTACATTACCATGA 1209 0.493 MALSRFASSSSSSRSSLLIPISSAFSSAPSFRRSISSAADDSSTLTIETSLPFTAHNCDTPSRSVDTNPKQLMSFFRDMAVMRRMEIAADSLYKSKLIRGFCHLYDGQEAVAVGMEAAITKKDCIITSYRDHCTFLGRGGTLLEIFSELMGRRDGCAKGKGGSMHFYRKEAGFYGGHGIVGAQVPLGCGLAFAQKYSKDENVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKNPAYYKRGDYVAGLKVDGMDVLAVKQACKFAKEYALKNGPIVLELDTYRYHGHSMSDPGSTYRTRDEVSGVRQERDPIERVRKLLLKHEIAAEKELKDIEKEVKKEVDEAIAKAKESPLPEPSELFTNVYVNGLGTEACGADRKEVRVTLP 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0547 402 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 36 384 - -
Lele56g0547 402 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 65 383 IPR029061 -
Lele56g0547 402 TIGRFAM PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 70 382 IPR017597 GO:0004739|GO:0006086|GO:0043231
Lele56g0547 402 FunFam Pyruvate dehydrogenase E1 component subunit alpha 34 395 - -
Lele56g0547 402 Pfam Dehydrogenase E1 component 78 373 IPR001017 GO:0016624
Lele56g0547 402 CDD TPP_E1_PDC_ADC_BCADC 75 365 - -
Lele56g0547 402 Gene3D - 27 397 - -
Lele56g0547 402 Coils Coil 340 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0547 Lele-ChrLele56 4024776 4028933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g0547 1 402 Acyl Lipid Metabolism Gene Families AT1G24180 76.866 0.0 659
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0907 53 18736555 18740956 Lele56g0547 56 4024776 4028933 hybridization
Lele54g0894 54 15467354 15471720 Lele56g0547 56 4024776 4028933 hybridization