Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1443 ATGTTCCTCCGCCTGAGAAAGCAAACCCAGAATCAAGTGGAGAATGATCCCTCCTACAAAGATGCAAAGGTGGCTGAACTGAGGGCATCTCTGGGGCCATTATCTGGGCGAAGTCTAAAGTATTGCACAGACGCATGTCTCAGGAGATATTTAGAAGCCAGGAATTGGAACCTTGATAAAGCCGAGAAAATGTTGGAAGAAACACTCAAATGGAGATCCACTTACAAGCCTGAGGAAATCCGTTGGCCTGAAGTTGCACATGAGGGTGAAACTGGAAAAGTGTCAAGAGCAAATTTTCACGATCGTTCTGGAAGAACTGTGCTTATCATGAGGCCCGGAATGCAGAACACGGCAAACCCAGAAGATAATATCAGGCATTTGGTGTACCTCATGGAGAATGCTATCCTCAATCTCCTCGAAGGTCAAGAACAGATGTCATGGCTGATAGACTTCACTGGATTTTCACTCAACACTAATGTTTCTGTCAAAACAGCTCGTGATATAATTTACATCTTACAGAATCACTATCCTGAAAGGCTCGGTATTGCTTTTCTCTATAGCCCACCAAGGATATTTCAAGCTTTTTGGAAGGCTGTGAGATACTTCTTGGATCCCAAGACATTCCAGAAGGTGAAATTTGTTTATCCTAAGGACAAGGAGAGTGAAGAGCTGATGAAATCACTGTTTGACGTGGAAAATCTACCCAATGAGTTTGGAGGAAAAGCGACATTGAAGTATGATCATGAAGAGTTTTCAAGGATGATGATAGAAGATGATGTAAAAACTGCTAAATTGTGGGGTGTTGATGACAAACCATTTCGCACTAAGAATGAACATCCTAGAAGAGGCAAGATGATAAAAGCCGTATTGGTGATGAACACGCAGGGGAAGCCCCGTCTTGCAAAATTTTATGAATTTCGGCCTGTGGAGAAGCAGCAGGAACTAATACGTAATGTGTTTTCAGTCTTGTGCAGTAGAGCTGAAAGTGTTAGTAGTTTCGTGGATGCTGAGTCCATCTTTGGTCAGGATGCTCGCCTTGTCTACAAGCACTATGCAACTTTATACTTTGTGTTCATATTTGATAGTTCTGAAAATGAGCTGGCTATGCTTGACTTAATACAAGTCTTTGTTGAAACACTGGACAAATGCTTCAGAAATGTTTGTGAACTTGACGTAGTGTTCAATTATAGCAAGTTGCATTCTATTCTAGATGAGATTATCTTTGGAGGCCAGGTTTTGGAAACAAGCTCAGCCGACGTTATGAAGGCTATTGAAGAATTGTCAAGGCTAGAAGCGGCCTCCAACGCTATCAACCTTGTCCCGAAATCTGTTTCTGGTTGGAGGACGCGGTAG 1353 0.4242 MFLRLRKQTQNQVENDPSYKDAKVAELRASLGPLSGRSLKYCTDACLRRYLEARNWNLDKAEKMLEETLKWRSTYKPEEIRWPEVAHEGETGKVSRANFHDRSGRTVLIMRPGMQNTANPEDNIRHLVYLMENAILNLLEGQEQMSWLIDFTGFSLNTNVSVKTARDIIYILQNHYPERLGIAFLYSPPRIFQAFWKAVRYFLDPKTFQKVKFVYPKDKESEELMKSLFDVENLPNEFGGKATLKYDHEEFSRMMIEDDVKTAKLWGVDDKPFRTKNEHPRRGKMIKAVLVMNTQGKPRLAKFYEFRPVEKQQELIRNVFSVLCSRAESVSSFVDAESIFGQDARLVYKHYATLYFVFIFDSSENELAMLDLIQVFVETLDKCFRNVCELDVVFNYSKLHSILDEIIFGGQVLETSSADVMKAIEELSRLEAASNAINLVPKSVSGWRTR 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1443 450 Gene3D - 285 442 - -
Lele55g1443 450 SUPERFAMILY CRAL/TRIO N-terminal domain 7 83 IPR036273 -
Lele55g1443 450 Gene3D - 3 279 IPR036865 -
Lele55g1443 450 FunFam AP complex subunit sigma 285 440 - -
Lele55g1443 450 SMART sec14_4 88 243 IPR001251 -
Lele55g1443 450 SUPERFAMILY SNARE-like 285 428 IPR011012 -
Lele55g1443 450 SUPERFAMILY CRAL/TRIO domain 82 261 IPR036865 -
Lele55g1443 450 Pfam CRAL/TRIO domain 98 240 IPR001251 -
Lele55g1443 450 ProSitePatterns Clathrin adaptor complexes small chain signature. 346 356 IPR000804 GO:0006886|GO:0016192|GO:0030117
Lele55g1443 450 Pfam Clathrin adaptor complex small chain 285 430 IPR022775 -
Lele55g1443 450 Coils Coil 413 433 - -
Lele55g1443 450 PANTHER GH16843P 10 275 - -
Lele55g1443 450 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 82 246 IPR001251 -
Lele55g1443 450 CDD SEC14 100 241 IPR001251 -
Lele55g1443 450 SMART CRAL_TRIO_N_2 43 68 IPR011074 -
Lele55g1443 450 FunFam Phosphatidylinositol transfer protein 3 3 275 - -
Lele55g1443 450 CDD AP3_sigma 285 429 IPR027155 GO:0006896|GO:0030123
Lele55g1443 450 Pfam CRAL/TRIO, N-terminal domain 42 67 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1443 Lele-ChrLele55 20642719 20648606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1443 47 236 Acyl Lipid Metabolism Gene Families AT1G55840 26.214 3.49e-09 56.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele55g1443 55 20642719 20648606 Lele55g1443 55 20642719 20648606 ECH
Lele54g0055 54 464408 466709 Lele55g1443 55 20642719 20648606 hybridization