Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0167 ATGGGTACGCTTCAGACTTGGAGAAAAGCTTATGGTGCCCTCAAAGATACCACCAAAGTTGGTCTTGCCCATGTCAACAGCGATTACGCGGATTTGGAGGTTGCCATAGTTAAAGCCACGAACCACGTTGAATGCCCTCCAAAGGAGAGACACCTTAGAAAAATTCTATTTGCCACGTCTGCTATTCGACCCCGAGCTGATGTTGCTTACTGCATTCATGCACTTGCCCGTCGATTGGCCAAGACACGAAATTGGACGGTGGCACTAAAAACACTGATTGTCATCCATAGGCTATTAAGAGAGGGTGATCCTACTTTCAAAGAAGAATTTCTGAATTTCTCACAAAGAGGACGCATTCTCCAACTTTCTAATTTTAAGGATGATTCTAGCCCAATTGCTTGGGATTGCTCTGCTTGGGTACGCACATATGCATTGTTTTTGGAAGAGAGGCTTGAATGTTTTCGGATTTTGAAGTATGATATTGAAGCTGAACGTCTTCCCAAGCCTTCCCAAGGGCAGGAGAAGGGTTACAGCAGGACGAGGGATCTGGAAAGTGAAGAACTATTGGAGCAGTTGCCCGTTTTGCAGCAGCTTCTCTATCGGCTTATTGGCTGCAAGCCAGAAGGAGCAGCTGTTAGCAACTATGTGATACAATATGCTCTAGCTCTGGTACTGAAAGAGAGCTTTAAGATTTATTGTGCCGTTAATGATGGAATCATCAATCTTGTTGATAAGTTTTTTGAGATGCCGAGACATGAAGCTATCAAAGCATTTGATATCTATAGACGTGCTGGCCAGCAGGCAGCAAATTTATCTGATTTCTATGAAGTATGCAAAGGTTTGGAACTTGCTCGGAATTTTCAGTTTCCTGTCCTAAGAGAGCCTCCTCAATCTTTTCTTACAACCATGGATGAGTACATAAGAGAGGCACCACGAGTGGTGACAGTGCCAACTGAGCCATTGCTTCAGTTGACATACAGACCAGAGGAAGAAGTTCCTGCAATTGAAGACAGTAAATCATCTGTTGAAGAGGAGGAGCCATCATTGCCTGCAGATGATGTTGCCTCCAATTCTAAGACTGTTCCTCCTCCTCCTCCTCCGCTTCCATCTCAAAACAACTTTGACACTGGAGACTTATTGGGTTTGAGTGACACTGTACCTGATGCATTGTTGATAGAGGAAAGAAATGCTCTTGCCCTAGCCATAGTACCCACTGAAAATGGCACGACATCTGGTTTTGAGTCTAGTGCCACTCAAGCAAAAGATTTTGATCCAACTGGATGGGAGCTAGCTTTGGTTTCCACCCCGAGTAGCAATATTTCCTCAGTCAATGAAAGACAATTGGCTGGCGGAATGGACTCGCTCACTCTTAACAGCTTATACGATGAAGCAGCATATAGATCACAGCAGCCAGTGTATGGAGCACCGGCTCCAAATCCATTTGAGGTTCAAGATCCATTCGCTTTCTCAAGCGGCATCCCTCCTCCTCCTGCTGTCCAAATGGAAGCGATGTCTCAGCAGCAAACGAATCCATTTGGTCCATTCCAACCTTTTCAGCCTCAGCAGCAGCAGCAGCAGCTGTTGATGAGCGCTGCAAATCCTTTTGGGGATGCAGGATATGGAGCGTTTCCTGCGAATCCTGTTTCTCACCCACAAAATAACAACAATCCATTTGGTAACCCAGGCTTGCTATGA 1695 0.4537 MGTLQTWRKAYGALKDTTKVGLAHVNSDYADLEVAIVKATNHVECPPKERHLRKILFATSAIRPRADVAYCIHALARRLAKTRNWTVALKTLIVIHRLLREGDPTFKEEFLNFSQRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIEAERLPKPSQGQEKGYSRTRDLESEELLEQLPVLQQLLYRLIGCKPEGAAVSNYVIQYALALVLKESFKIYCAVNDGIINLVDKFFEMPRHEAIKAFDIYRRAGQQAANLSDFYEVCKGLELARNFQFPVLREPPQSFLTTMDEYIREAPRVVTVPTEPLLQLTYRPEEEVPAIEDSKSSVEEEEPSLPADDVASNSKTVPPPPPPLPSQNNFDTGDLLGLSDTVPDALLIEERNALALAIVPTENGTTSGFESSATQAKDFDPTGWELALVSTPSSNISSVNERQLAGGMDSLTLNSLYDEAAYRSQQPVYGAPAPNPFEVQDPFAFSSGIPPPPAVQMEAMSQQQTNPFGPFQPFQPQQQQQQLLMSAANPFGDAGYGAFPANPVSHPQNNNNPFGNPGLL 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0167 564 Gene3D - 7 161 IPR008942 -
Lele55g0167 564 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Lele55g0167 564 FunFam Clathrin assembly protein AP180 6 161 - -
Lele55g0167 564 PANTHER CLATHRIN ASSEMBLY PROTEIN 6 507 IPR045192 GO:0048268|GO:0072583
Lele55g0167 564 MobiDBLite consensus disorder prediction 547 564 - -
Lele55g0167 564 MobiDBLite consensus disorder prediction 330 346 - -
Lele55g0167 564 MobiDBLite consensus disorder prediction 327 380 - -
Lele55g0167 564 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
Lele55g0167 564 SMART enth_2 30 161 IPR013809 -
Lele55g0167 564 FunFam Putative clathrin assembly protein 173 321 - -
Lele55g0167 564 MobiDBLite consensus disorder prediction 539 564 - -
Lele55g0167 564 SUPERFAMILY GAT-like domain 178 309 - -
Lele55g0167 564 CDD ANTH_N 32 154 - -
Lele55g0167 564 Gene3D ANTH domain 173 324 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Lele55g0167 564 Pfam ANTH domain 31 309 IPR011417 GO:0005543
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0167 Lele-ChrLele55 1054533 1058890 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1312 53 21478888 21486355 Lele55g0167 55 1054533 1058890 hybridization
Lele54g1290 54 18100767 18102455 Lele55g0167 55 1054533 1058890 hybridization