Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0539 ATGGCAAAGAGAAACTCCTTGATTGTTTTATCTTCGGATGATGAAGATGATGGTACTACTTATTCCTTGAGTGGGAGTAATAGCTATGCCAAGTCCAAGTCAAGGTCCACAAGCACTAGAGGAAAGAAGAAGGCCCGCCTTTCAGGTTCTCGGTCTCGAAGGTCCAAAGATTCCAGCAAGTTGCATGAGATCAACCAACTTGGAGAAGACTTCAATGAAGTGTTTACTGGGTTCGATGTATCTGCTGGCACACGAAGGAGCGATTCAGGGGAGCTATGGGTTGATAAACACAAGCCCCATTCCCTGGAAGAGCTTGCTGTTCACAAGAGAAAGGTTGAAGAAGTTAAGATGTGGTTTGAGCAAAGGTTAAAAACTTCTAAGGAGCTTCTTTCATGTCCTGGAATAGCCAAACCTGGCAATTTTGGATTACTAAGTATAACCTTTTGTTGTGTCTTGTTGGGATGTTTTGGTGTTCTGAGCCTCTTGCTAGGATTAGGTGGACAGGGCAATCAGGTGGCTGCAGTTCAGGTAATTTCTTCTCACCTTGGAGCTATTCTGTGTGAATGGAACACACCTACACCTGTACTTTGGCAAGAGCACCTACATAATTCTAGTTCAGGGACCCAATACACATCCAAGTTGGATGAGTTTGAAACTTACGTTGAAAGAATAAGGAAATATGGGTTATTGTCAACTCATTTGAATGGGGAGTCAAAAGCACCCATCATAATTTTAATTGATGATCTTCCTGTGACAAATGGGAAAGCTGCTTTTGGACGACTACAAGATTGCTTACACCTGTTGGTGCGCTCAACTCAGATACCCACAGTTATAGTGTTCACAGACTATGGCAATGCTGATTCAGCAGACCATGATGCACAATGCTTGGAAAAAATTCAGCTATCTCTTCAGAGTGCTGGGGCCTGTAAGATTGCATTCAATCCTATTACAACGAATTCTATCAAGAAGGTACTTTTTAGAATATGCCAACTAGAGCAGTGTGATGTGACTGTGGAACATGTTGATCTTATTGCTAAAGCTAGTGGAGGTGACATCAGGCATGCGATCGCATCATTGCAGTTCTTCTGTCTCCAACAGAATCAACTGCATTCTTTGTCTCCATCCAGTAACTTTCTAAGTGTATCAAAAAAGAAAGAAAAGAAGGCTGTCGCTTTAGATGATGGCTATTCCTTGCACTTTAGCAGAGATGAGACACTATCTTTATTTCATGCCTTGGGGAAATTTTTACACAACAAAAGAGAGTCTGAAAGAGTGTCCAAATATGAGCATGACACATTTCTTATCCGAGAAAGATTTGCAAGATTACCCTTGAAAATGGATGTCCCGGAGAAGATTCTTTGTCATGCCCATGTGCAACCTGGTCCTGTTGCTGAATTTCTGCACGAAAATGTGCTTGATTTTATGAATGAGGAGGCAATTGAGGATGCGTGGGTAGTGTCTTCATATCTAGGTGATGCTGACATTCTTCTTGCTAAATTTAGACGAATGGCCTCTAGATATAATGAGGCAGAGGGTGTTCTACCATCAGCTGCTGCTTCTGTTGCTGTTCGTGGAGTATTATTTGGAAATTCTCATACACTATCCTCCAGGTGGCATGCTGTGCGAGGCCCAAAACTGTGGGGTGTTGAGAGGGAATTACTATATAACAAGAACAAGATGCTCAAGCAGCAAGTTGCAGAGTTTGAAGGGTTGACTTCTTGTAATACATCAGTTATGGCCACAGAGTACATGCCTGTGTTAAAATGGCTTGGAAATAGGCGTGAATCTCCTCAGTTATCAGTGCATGACTTGGATATGGAAGGTATTGATTTCGACCAAATGATTTTAGATGACCAAGAAAATGAGGACGAGATAGAAGATTGGTAG 1887 0.4202 MAKRNSLIVLSSDDEDDGTTYSLSGSNSYAKSKSRSTSTRGKKKARLSGSRSRRSKDSSKLHEINQLGEDFNEVFTGFDVSAGTRRSDSGELWVDKHKPHSLEELAVHKRKVEEVKMWFEQRLKTSKELLSCPGIAKPGNFGLLSITFCCVLLGCFGVLSLLLGLGGQGNQVAAVQVISSHLGAILCEWNTPTPVLWQEHLHNSSSGTQYTSKLDEFETYVERIRKYGLLSTHLNGESKAPIIILIDDLPVTNGKAAFGRLQDCLHLLVRSTQIPTVIVFTDYGNADSADHDAQCLEKIQLSLQSAGACKIAFNPITTNSIKKVLFRICQLEQCDVTVEHVDLIAKASGGDIRHAIASLQFFCLQQNQLHSLSPSSNFLSVSKKKEKKAVALDDGYSLHFSRDETLSLFHALGKFLHNKRESERVSKYEHDTFLIRERFARLPLKMDVPEKILCHAHVQPGPVAEFLHENVLDFMNEEAIEDAWVVSSYLGDADILLAKFRRMASRYNEAEGVLPSAAASVAVRGVLFGNSHTLSSRWHAVRGPKLWGVERELLYNKNKMLKQQVAEFEGLTSCNTSVMATEYMPVLKWLGNRRESPQLSVHDLDMEGIDFDQMILDDQENEDEIEDW 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0539 628 Pfam Rad17 P-loop domain 87 126 - -
Lele54g0539 628 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 364 IPR027417 -
Lele54g0539 628 CDD HLD_clamp_RFC 316 365 - -
Lele54g0539 628 MobiDBLite consensus disorder prediction 36 50 - -
Lele54g0539 628 Gene3D - 90 298 IPR027417 -
Lele54g0539 628 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 87 596 IPR004582 GO:0006281
Lele54g0539 628 MobiDBLite consensus disorder prediction 12 35 - -
Lele54g0539 628 Gene3D - 317 392 - -
Lele54g0539 628 MobiDBLite consensus disorder prediction 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0539 Lele-ChrLele54 11823976 11829279 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0539 54 11823976 11829279 Lele54g0539 54 11823976 11829279 ECH
Lele54g0539 54 11823976 11829279 Lele55g0972 55 7351591 7356692 hybridization
Lele54g0539 54 11823976 11829279 Lele56g0894 56 7534600 7540155 hybridization