Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0645 ATGTGTTTTGAAGGATCTTCAATTTTTGGTGGAGCAACACTGAATCACACCCTCTGTCTAGCTCCTGGAAAGATAAATCTTGGAAACAAAATGTCTAATGTTGATGAACCACTATATCCAATAGCGGTGCTTATTGATGAGCTGAAAAATGATGACATCCAACTACGCCTGAATTCAATTCGCAAACTATCAACAATTGCACGTGCTCTTGGGGAGGAGCGAACTCGTAAGGAATTAATTCCATTTCTAAGTGAGAACAATGATGATGATGATGAGGTGCTTCTTGCAATGGCGGAAGAGTTGGGGGTTTTTATTCCGTATGTTGGGGGAGTGGAACATGCCAATGTGTTACTCCCTCCTCTGGAGACACTTTGCACTGTTGAGGAAACTTGTGTGAGAGACAAAGCAGTGGAGTCTCTTTGTAGAATTGGATCTCAAATGAGGGAGAGTGATTTGGTTGATTCATTTATCCCGTTGGTGAAGAGGTTGGCATCAGGTGAATGGTTTACTGCCCGAGTCTCTGCGTGTGGACTATTTCATATTGCATACTCAAGTGCACCGGAGACATCAAAGACTGAGTTGAGGTCAATATACAATCAATTGTGTCAAGATGACATGCCTATGGTTAGAAGGTCTGCTGCATCGAACCTTGGCAAATTTGCTGCAACTGTTGAATATCCTCATCTAAAGGCAGATATCATGCAAATTTTTGAGGATCTTACTCAGGATGATCAAGACTCTGTTAGATTGTTGGCCGTGGAGAGCTGTGCAGCTCTTGGCAAGCTGTTGGAACCTCAAGATTGTGTTGCACATATACTCCCTGTTATTGTCAACTTCTCTCAGGATAAGTCTTGGCGTGTGCGATACATGGTTGCTAATCAATTGTATGAGCTATGTGAGGCTGTGGGCCCTGAACCCACCAGAACGGAATTGGTCCCTGCATATGTTCGGTTGCTACGAGACAATGAGGCTGAAGTGCGTATTGCAGCTGCTGGAAAAGTCACCAAGTTTTGCAAAATTTTAAATCCTGAACTTGCTATTCAGCATATTCTCCCTTGTGTAAAGGAATTGTCATCAGATTCTTCACAGCATGTCCGTTCTGCTTTGGCTTCAGTAATTATGGGTATGGCTCCAGTGTTAGGAAAGGATGCTACAATTGAGCAGCTTCTTCCTATTTTTCTCTCCCTTCTAAAGGATGAATTTCCTGATGTGCGCTTGAACATCATCAGCAAGCTTGATCAAGTGAATCAGGTTATTGGAATCGATTTGTTATCTCAATCCTTGTTACCCGCCATTGTTGAGCTAGCCGAAGATAGGCATTGGAGAGTTCGCCTTGCAATTATAGAGTATATACCCTTATTGGCGAGTCAATTGGGTGTAGGATTTTTTGATGATAAGCTAGGTGGGCTTTGCATGCAATGGTTACAGGATAAGGTTCACTCAATTCGTGATGCGGCTGCTAACAACTTGAAGCGGCTTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCATATAATTCCACAGGTTTTGGAGATGATCAACAATCCACACTATTTGTATCGGATGACCATTCTTCGAGCTATTTCTCTACTTGCTCCTGTAATGGGTGCTGAAATCACTTGTGCGAAATTGTTGCCTGTCGTTATTGCTGCATCGAAAGACAAAGTACCCAACATCAAGTTCAATGTCGCAAAGGTGTTAGAGTCAATCTTCCCCATTGTTGATCAGTCTGTGGTGGAAAATACAATTCGTCCGTGTCTGGTTGAGCTTAGTGAGGATCCCGATGTCGATGTTCGATACTTTTCCAGCCAAGCACTTCAAGCAATTGATCATGTAATGATGTCTAGTTAG 1854 0.4293 MCFEGSSIFGGATLNHTLCLAPGKINLGNKMSNVDEPLYPIAVLIDELKNDDIQLRLNSIRKLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDSFIPLVKRLASGEWFTARVSACGLFHIAYSSAPETSKTELRSIYNQLCQDDMPMVRRSAASNLGKFAATVEYPHLKADIMQIFEDLTQDDQDSVRLLAVESCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCKILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGGLCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIIPQVLEMINNPHYLYRMTILRAISLLAPVMGAEITCAKLLPVVIAASKDKVPNIKFNVAKVLESIFPIVDQSVVENTIRPCLVELSEDPDVDVRYFSSQALQAIDHVMMSS 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0645 617 ProSiteProfiles HEAT repeat profile. 506 541 IPR021133 -
Lele53g0645 617 Pfam HEAT repeats 391 491 - -
Lele53g0645 617 Pfam HEAT repeat 272 300 IPR000357 GO:0005515
Lele53g0645 617 ProSiteProfiles HEAT repeat profile. 545 583 IPR021133 -
Lele53g0645 617 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 33 612 - -
Lele53g0645 617 FunFam Serine/threonine-protein phosphatase 2A regulatory subunit A alpha isoform 32 611 - -
Lele53g0645 617 Gene3D - 31 613 IPR011989 -
Lele53g0645 617 ProSiteProfiles HEAT repeat profile. 350 388 IPR021133 -
Lele53g0645 617 SUPERFAMILY ARM repeat 38 610 IPR016024 -
Lele53g0645 617 ProSiteProfiles HEAT repeat profile. 194 232 IPR021133 -
Lele53g0645 617 ProSiteProfiles HEAT repeat profile. 311 349 IPR021133 -
Lele53g0645 617 ProSiteProfiles HEAT repeat profile. 272 310 IPR021133 -
Lele53g0645 617 ProSiteProfiles HEAT repeat profile. 428 466 IPR021133 -
Lele53g0645 617 ProSiteProfiles HEAT repeat profile. 233 271 IPR021133 -
Lele53g0645 617 ProSiteProfiles HEAT repeat profile. 40 78 IPR021133 -
Lele53g0645 617 ProSiteProfiles HEAT repeat profile. 389 427 IPR021133 -
Lele53g0645 617 ProSiteProfiles HEAT repeat profile. 584 617 IPR021133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0645 Lele-ChrLele53 16615904 16621139 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0645 53 16615904 16621139 Lele55g0843 55 5818333 5822535 hybridization
Lele53g0645 53 16615904 16621139 Lele56g0784 56 5982802 5987211 hybridization