Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0904 ATGGCTGCTCTGCAATACCTAGAATCGCTGCGCAACGCGCACCCTGAGCTCTCAGATTGGTATAATTCGCTGGCAGATCTGTACCAGAAGAAACTATGGCATCAGCTCACTCTGAAGCTCGAGCAGTTCGTTGCTCTTGCTGTTTTCCAGGCTGGCGATGCTCTTATACAGTTATATCACAATTTCATAACAGACTTTGAGACTAAAATCAATCTTCTCAAGCTTGCACATTTTGCTGTGATTGTGTCTCGCCAGTATTCTGAAAAAGAAGCTGCTATTGGTTATCTTGAAGGAATCATTGAGAAGCTTCAAGCCACTAAAGAACAGCGCGTAGAAGAACCAATCCTTTACATCAAGTTGCAAATTGCCTTATTTAAGCTTGAGCAAGGTGACCAAAAGGAATGCAAGAAACTTCTAGATGATGGAAAGAGTACGCTTGATAGCATGACAGATATTGATCCATCAGTATATGCTAGCTATTACTGGGTATCATCTCAGTATTATAAATTTCGCCAGGAATTTGCTGAGTTCTACAAGAGTGCTCTTCTCTATCTGGCATATACATCAGTGGAGTCTCTCTCAGACTCATTCAAGCTGGATTTGGCATTTGATTTGTCCCTTTCTGCTCTTCTGGGAGATAACATCTACAACTTTGGAGAACTTCTTGCTCATCCTATTATAAAAAGTCTTCTGGGGACAAAGGTGGAATGGCTCTACTATATCCTTCAGGCATTCAACTCTGGCGATTTAGTTCGCTATCAAGAATTATGCCGGGTCCATAATGCTGCTTTAAGGGCTCAGCCAGCACTAGTTCAGAATGAGCAAAGGTTGTTGGAAAAAATCAACATTCTCTGCTTGATGGAGATTATTTTCAGTCGACCCTCTGAAGCCCGAACTATTCCATTGAGAGTTATCGCTGATCGCACAAAACTTTCTGTCGAGGATGTGGAGCATCTCCTCATGAAGAGCCTTTCTGTTCATCTGATTGAGGGTATAGTTGATCAAGTAGAAGGCACAGTTCATATTGCTTGGGTGCAGCCAAGAGTTCTTGGAATTCCACAGATCAAATCCTTACGGGATCGACTGGACGGCTGGATGGGTAAAGTGCACACCGCATTGCTATCCATCGAGGCCGAAACACCCGATCTAATCGGGTCATGA 1161 0.4324 MAALQYLESLRNAHPELSDWYNSLADLYQKKLWHQLTLKLEQFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYSEKEAAIGYLEGIIEKLQATKEQRVEEPILYIKLQIALFKLEQGDQKECKKLLDDGKSTLDSMTDIDPSVYASYYWVSSQYYKFRQEFAEFYKSALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVQNEQRLLEKINILCLMEIIFSRPSEARTIPLRVIADRTKLSVEDVEHLLMKSLSVHLIEGIVDQVEGTVHIAWVQPRVLGIPQIKSLRDRLDGWMGKVHTALLSIEAETPDLIGS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0904 386 SUPERFAMILY "Winged helix" DNA-binding domain 275 348 IPR036390 -
Lele52g0904 386 Pfam PCI domain 238 342 IPR000717 -
Lele52g0904 386 SMART PINT_4 272 365 IPR000717 -
Lele52g0904 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 272 365 - -
Lele52g0904 386 ProSiteProfiles PCI domain profile. 174 347 IPR000717 -
Lele52g0904 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 4 384 IPR035298 -
Lele52g0904 386 FunFam 26S proteasome non-ATPase regulatory subunit 13 homolog B 174 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0904 Lele-ChrLele52 5851825 5855919 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0904 52 5851825 5855919 Lele52g0904 52 5851825 5855919 ECH
Lele49g0882 49 5450519 5454629 Lele52g0904 52 5851825 5855919 hybridization
Lele50g0923 50 5812306 5816507 Lele52g0904 52 5851825 5855919 hybridization