Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0882 ATGACTGCTCTGCAATACCTAGAATCGCTGCGCAACGCGCACCCTGAGCTCTCAGATTGGTATAATTCTCTGGAAGATCTGTACCAGAAGAAACTCTGGCATCAGCTCACTTTGAAGCTCGAGCAGTTCGTTGCTCTTGCTGTTTTCCAGGCTGGTGATGCTCTTATACAGTTATATCACAATTTCATAACAGACTTTGAGACTAAAATCAATCTTCTGAAGCTTGCACATTTTGCTGTGATTGTGTCTCGGCAGTATTCTGAAAAAGAAGCTGCTATTGGTTATCTTGAAGGAATCATTGAGAAGCTTCAAGCCACTAAAGAACAGCGCATAGAAGAACCAATCCTTTACATCAAGTTGCAAATTGCCTTATTTAAGCTTGAGCGAGGTGACCAAAAGGAATGCAAGAAACTTCTAGATGATGGAAAGGGTACGCTTGATAGCATGACAGATATTGATCCATCTGTATATGCTAGCTATTACTGGGTATCATCTCAGTACTATAAATTTCGCCAGGAATTTGCTGAGTTCTACAAAAGCGCTCTTCTCTATCTGGCATATACATCAGTGGAGTCTCTCTCAGACTCATTCAAGTTGGATTTGGCATTTGATTTGTCCCTTTCTGCTCTTCTGGGAGATAACATCTACAACTTTGGAGAACTTCTTGCTCATCCTATTATAAAAAGTCTTCTGGGGACAAAGGTGGGATGGCTCTACTATATTCTTCAGGCATTCAACTCTGGCGATTTAGCTCGCTATCAAGAATTATGCCGGGTCCATAATTCTGCTTTAAGGGCTCAGCCAGCACTAGTTCAGAATGAACAAACGTTGTTGGAAAAAATCAACATTCTCTGCTTGATGGAGATTATATTCAGTCGACCCTCTGAAGCCCGAACTATTCCATTGAGAGTTATCGCTGATCGAACAAAACTTTCTGTTGAGGATGTGGAGCATCTCCTCATGAAGAGCCTTTCTGTTCGTCTGATTGAGGGTATAATTGATCAAGTAGAAGGCACTGTTCATATTACTTGGGTGCAGCCAAGAGTTCTTGGAATTCCACAGATCAAATCCTTACGGGATCGACTGGACGGCTGGATGGGTAAAGTGCACACCTCGTTGATATCCATCGAGGCCGAAACACCTGATCTAATCGGGTCATGA 1161 0.4246 MTALQYLESLRNAHPELSDWYNSLEDLYQKKLWHQLTLKLEQFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYSEKEAAIGYLEGIIEKLQATKEQRIEEPILYIKLQIALFKLERGDQKECKKLLDDGKGTLDSMTDIDPSVYASYYWVSSQYYKFRQEFAEFYKSALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVGWLYYILQAFNSGDLARYQELCRVHNSALRAQPALVQNEQTLLEKINILCLMEIIFSRPSEARTIPLRVIADRTKLSVEDVEHLLMKSLSVRLIEGIIDQVEGTVHITWVQPRVLGIPQIKSLRDRLDGWMGKVHTSLISIEAETPDLIGS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0882 386 SMART PINT_4 272 365 IPR000717 -
Lele49g0882 386 Pfam PCI domain 239 343 IPR000717 -
Lele49g0882 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 272 365 - -
Lele49g0882 386 ProSiteProfiles PCI domain profile. 174 347 IPR000717 -
Lele49g0882 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 4 384 IPR035298 -
Lele49g0882 386 Gene3D - 227 343 - -
Lele49g0882 386 SUPERFAMILY "Winged helix" DNA-binding domain 274 348 IPR036390 -
Lele49g0882 386 FunFam 26S proteasome non-ATPase regulatory subunit 13 homolog B 174 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0882 Lele-ChrLele49 5450519 5454629 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0882 49 5450519 5454629 Lele49g0882 49 5450519 5454629 ECH
Lele49g0882 49 5450519 5454629 Lele51g0898 51 5527669 5531769 hybridization
Lele49g0882 49 5450519 5454629 Lele52g0904 52 5851825 5855919 hybridization