Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0711 ATGGATGTTACAGCAGTGGGTATTTTGTGTGGTCATCCTGCACTGATCACTGATCTTGGAACTTGCAGTCCCACAATAACAGAGAAAGATACAGGCAGTTCAAGTAATTTAATGGTCGAATCTACTTCAAGTAATTTTAGTGCATTAATAAGTGCATGTACTGATGGCTTCTTGTGTGTATTGAGTAGAAGCAGTGGTCATTGCCGGTGCAGGAGGAAATTGCCTCCTTGGGTGGGCAGTCCATGCATGATTCGAACACTGCCTTCAAGAGCAAGATATGTATGTATTGGTTGTTCTTTCATGGACACTGTCCATTTGTCAGACCACTATTCAGTGAATGCTGTGGAAGGAAATGACGGTTTGATTGATAGAGAAACTCAGACTAGGAAGCCTCCAAAATGCACTATTGTTATTGTTGACACATATTCACTTACCATTACCCGAACTGTTTTTCATGGAAATCTCTCTATTGGCCCCATGAAGTTTATGGCTGTAGTTTCAGTTGATAATGATAAAGAGAGGCATTCTATATTCGTGGCTGATTCAGTTGGTAAGCAACAAATGGTTTCTGTTTCAATAGATCCTCATGATCAGGGGGAAAACTTTTCTAGTTTGAACAAAGATACATCTCAGTTGGAAAGTTCTGTTTGGGCTGAGGGATTGAGTGGGGTGCAAGAAATTATTTCAATTGCAACCCATGGGAATGTTGGTGCTTTTATGTTTAAAGACCACTGCATATTCAGGTTACTGTCTAGTGATACAAAATTGGGAGAGATTTCTTTTTTGGACAATCTTTTATGTTCTGATGAGCATTCTACTCAAGTACATGTAGTGGGGACCATGTTTCTTGAGACTGTTGGTGGAAGGACTATGCTGAATTGCCACGAAAAGAGTTGTTCAATTCCAGAAAATTTTGTTGTCTGGAACAATATAGGTTATGCAGTTGTGTATAAAATATCATATCAGAATGACATTTTTCAATGTGAACATTGTTCTGCAATTCCTTCTACTTATTCTAAGCCTGACATGAGAGAGAATGTTAGGGATCCAAGTCATGGGGACAGTGTAAAACAACTTCTTCATATTCTTGACCTCTCTTATAGACTAGAATGGGTTGGTGACCGGAAAATTCAACAGAGCCTTAAGACAAAAATTTTCTGGTTTAACTTCAGTCATGGTCGGTTGTTCTTTGTAAGGGACAAAGAAAAGAATAGTGGGCAAAGGTTGGTCTGGTGTCTGCTGTTGTGTGCCTTGTTTGTTCACATTAATGGAGCAACCATATCGTATGAAAGGAAAAGGAACTCCTCAGGTACTTATGACTATGGAGATGCTATTGGCAAAGCCATCTTGTTTTTCGAAGGACAACGCTCTGGGAAGTTACCTTCCTCCCAGAGAATGAAGTGGAGGGGAGACTCTGCTCTCTCTGATGGCAAACTGCAAAATGTGAATTTGGTGGGAGGATACTATGATGCAGGTGACAATGTGAAGTTTGTATGGCCGATGTCTTTCACAGTGAGCTTATTGAGTTGGACTGCTATTGAGTACGAGAGTGGTATAGCATCAGTGAAGCAGCTCGATTACCTCCATTCTGCTATTCGTTGGGGTTCAGACTTCATACTGCTAGCTCACTCTTCCCCAACTACTCTCTTCACACAGGTGGGAGATGGAAATTCGGATCATCAATGTTGGGAACGTCCGGAGGACATGGACACACCTAGAACGTTGTACAAGATTGATGCTAATTCTCCTGGAACTGAAGCTGCAGCTGAATCTGCTGGTGCTCTTTCTGCTGCTTCAATTGTTTTCCAGAAAATAGATAGCAATTATTCCTCAAGGCTATTAAGCCAATCAAAATCAGATGAACTATTGTGGGCTGCCTCTTGGCTATACAAGGCCAGTGGAGAAAGCAAGTACATGGACTACATATTAAGCAACCAAGGTTGGAGCCAGGTGGCGTCTGAGTTCAGTTGGGATAACAAATTTGTTGGAGCTCAAACGTTACTAGCACAAGAATACTACAGTGAGAAGAACAATCAGTTGGCCAAGTTTGGGAGTAACTTAGAGTCATTTATATGCTCAGTGATGCCAGGAAGTAACTCTCAGCAGATCAAAACCACGCCTGATTCTCCAACGTCCTCAAAACCAATCATATTGATGGGATCCAATGTGGCTCCACGCATTTTACAGCCTCTCAAATTGCAGACTTTGCAAAGACACAGAGGATCGTCGATTCCTTCAATTAAAGATCATCCAGCGAAGGTGGGTTGTAATGATGGCCAAAATGAATATTACTCTTCCACAAATCCGAATCCCAACATTCTGGTGGGTGCCATTGTTGGAGGCCCTGATTCCAATGACCAGTTTAATGATGTCCGATCTGACTATTCTCACTCCGAACCAACCACTTACATGAATGCTGCTTTTGTGTCTTCCCTCGCTGCTTTGCTCCCTGCAGGATAA 2460 0.4183 MDVTAVGILCGHPALITDLGTCSPTITEKDTGSSSNLMVESTSSNFSALISACTDGFLCVLSRSSGHCRCRRKLPPWVGSPCMIRTLPSRARYVCIGCSFMDTVHLSDHYSVNAVEGNDGLIDRETQTRKPPKCTIVIVDTYSLTITRTVFHGNLSIGPMKFMAVVSVDNDKERHSIFVADSVGKQQMVSVSIDPHDQGENFSSLNKDTSQLESSVWAEGLSGVQEIISIATHGNVGAFMFKDHCIFRLLSSDTKLGEISFLDNLLCSDEHSTQVHVVGTMFLETVGGRTMLNCHEKSCSIPENFVVWNNIGYAVVYKISYQNDIFQCEHCSAIPSTYSKPDMRENVRDPSHGDSVKQLLHILDLSYRLEWVGDRKIQQSLKTKIFWFNFSHGRLFFVRDKEKNSGQRLVWCLLLCALFVHINGATISYERKRNSSGTYDYGDAIGKAILFFEGQRSGKLPSSQRMKWRGDSALSDGKLQNVNLVGGYYDAGDNVKFVWPMSFTVSLLSWTAIEYESGIASVKQLDYLHSAIRWGSDFILLAHSSPTTLFTQVGDGNSDHQCWERPEDMDTPRTLYKIDANSPGTEAAAESAGALSAASIVFQKIDSNYSSRLLSQSKSDELLWAASWLYKASGESKYMDYILSNQGWSQVASEFSWDNKFVGAQTLLAQEYYSEKNNQLAKFGSNLESFICSVMPGSNSQQIKTTPDSPTSSKPIILMGSNVAPRILQPLKLQTLQRHRGSSIPSIKDHPAKVGCNDGQNEYYSSTNPNPNILVGAIVGGPDSNDQFNDVRSDYSHSEPTTYMNAAFVSSLAALLPAG 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0711 819 PANTHER ENDO-1,4-BETA-GLUCANASE 413 708 - -
Lele52g0711 819 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 788 806 IPR033126 -
Lele52g0711 819 Pfam Glycosyl hydrolase family 9 739 810 IPR001701 GO:0004553|GO:0005975
Lele52g0711 819 Pfam Glycosyl hydrolase family 9 619 707 IPR001701 GO:0004553|GO:0005975
Lele52g0711 819 Pfam Glycosyl hydrolase family 9 441 618 IPR001701 GO:0004553|GO:0005975
Lele52g0711 819 Gene3D - 438 617 IPR012341 GO:0005975
Lele52g0711 819 Gene3D - 732 819 IPR012341 GO:0005975
Lele52g0711 819 Gene3D - 618 715 IPR012341 GO:0005975
Lele52g0711 819 SUPERFAMILY Six-hairpin glycosidases 439 816 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0711 Lele-ChrLele52 4463207 4473465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0711 440 816 Glycoside Hydrolase AT4G23560 53.626 1.03e-148 443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0711 52 4463207 4473465 Lele52g0711 52 4463207 4473465 ECH
Lele49g0687 49 4159184 4167591 Lele52g0711 52 4463207 4473465 hybridization
Lele50g0721 50 4426691 4430077 Lele52g0711 52 4463207 4473465 hybridization