Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0640 ATGGCTTCGTCGGCGAAAACGATACTCGTGACCGGAGGGGCCGGCTTCATCGGCTCTCACACCGTCGTTCAGCTTCTCAAAGATGGCTTTAACGTTACTATCATAGATAATCTTGACAACTCCGTCATGGAAGCCGTCAACCGTGTTCGGGATTTGGTCGGCCCCGATTCGTCTAAGAACCTCGACTTCGTTCAAGGTGATCTCAGGAGTGTAGGTGACTTGGAGAAACTGTTTTCCAAAACCAAATTCGATGCGGTGATTCATTTTGCTGGGCTAAAAGCTGTTGGAGAAAGTGTTCAAAATCCCCTCCGGTATTTTGAATATAACTTAATAGGAACCATCAATCTCTATCAAACCATGAAAAAGTACAAATGTAAGAAGATTGTATTTTCATCATCTGCAACCGTCTATGGTGAAGCGAGAACGATACCCTGTGATGAGAATTGCGAGTTAACGGTCGTGAGTCCTTATGGAAGGACCAAGCTGATACTGGAAGACATTGCAAGAGACCTTCAAAAAGCAGAACCAGATTGGGGAATCATTTTACTCAGATACTTCAATCCAGTAGGAGCCCATGAGAGTGGCAAAATAGGTGAAGATCCGAGAGGAATTCCCAATAATCTAATGCCTTTCATACAGCAAGTTGCCGTCGGAAGATTGCCAGAGCTCAACGTATTCGGTCTTGATTACTCGACAAAAGATGGCACTGCAGTACGAGACTATATCCATGTAATGGACTTGGCAGATGGTCACATCGCTGCCCTGCGCAAGCTTTTCAACACAGACAATATGGGTTGTACGGCTTACAACCTTGGAACTGGTCGTGGTACGTCGGTGCTTGAAATGGTTGCAGCATTCGAAAAAGCTTCTGGAAAGAAAATTCCGCTGAAAAAGTGTCCCAGGAGAGCAGGAGATGCTGTTGCTGTATATGCATCAACTGAGAAAGCTGAGAAAGAACTAGGGTGGAAGGCGAAATATGGTGTAGAGGAAATGTGCAGGGACCAATGGTGTTGGGCAAGCAACAATCCGTGGGGCTACAAGGGGCAGTCATAG 1053 0.4587 MASSAKTILVTGGAGFIGSHTVVQLLKDGFNVTIIDNLDNSVMEAVNRVRDLVGPDSSKNLDFVQGDLRSVGDLEKLFSKTKFDAVIHFAGLKAVGESVQNPLRYFEYNLIGTINLYQTMKKYKCKKIVFSSSATVYGEARTIPCDENCELTVVSPYGRTKLILEDIARDLQKAEPDWGIILLRYFNPVGAHESGKIGEDPRGIPNNLMPFIQQVAVGRLPELNVFGLDYSTKDGTAVRDYIHVMDLADGHIAALRKLFNTDNMGCTAYNLGTGRGTSVLEMVAAFEKASGKKIPLKKCPRRAGDAVAVYASTEKAEKELGWKAKYGVEEMCRDQWCWASNNPWGYKGQS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0640 350 CDD UDP_G4E_1_SDR_e 7 338 IPR005886 GO:0003978|GO:0006012
Lele52g0640 350 FunFam UDP-glucose 4-epimerase 4 282 350 - -
Lele52g0640 350 Pfam GDP-mannose 4,6 dehydratase 9 334 IPR016040 -
Lele52g0640 350 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 348 - -
Lele52g0640 350 Gene3D - 8 279 - -
Lele52g0640 350 TIGRFAM galE: UDP-glucose 4-epimerase GalE 8 343 IPR005886 GO:0003978|GO:0006012
Lele52g0640 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 347 IPR036291 -
Lele52g0640 350 Gene3D - 197 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0640 Lele-ChrLele52 4056869 4058823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0640 7 323 Miscellaneous Gene Families AT4G00110 27.928 1.01e-23 99.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0640 52 4056869 4058823 Lele52g0640 52 4056869 4058823 ECH
Lele49g0620 49 3758791 3760740 Lele52g0640 52 4056869 4058823 hybridization
Lele50g0647 50 3972861 3974044 Lele52g0640 52 4056869 4058823 hybridization