Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0556 ATGATTCCATTATGTTACTACTTACTCATTGTATCAAGAACCTTGCTTTCAAAATCATGTACAGTTGTATATAAATTCCAAGAACCTGTTCAATGCACAAGTCTCCTCCTTTGCACTCAGCCTTATAGATCAGTCGGTTGTGCAACCAATGTTCATTTTTTAAGTTTAGGTGGCCATTTCCGTAGGTTCATAATGATGCTTGACTGCGTAAAATTCCCCAATTCTCCCATTTCCATCCTGCGTCTTCTCGATCCCTCCGCCCTTCTTGCGGTGACCCAACATACATTAACTAGATTCTGCGCATCTCGATCTCGCTGCCTCCACTGTCGTTCCCGAACAGTTTTTGCCGATCATCACTCTTCCTATATCAATAGCCATTGTCCCGAGATGAGCACCGGCGAGCTCCTTAGCATTGAACCTCTAGAACTCAAGTTTCCCTTTGAGCTGAAGAAGCAGATCTCATGCTCCATTCAATTGTCAAATAAGACCGACAGCTATGTAGCTTTCAAGGTCAAAACAACCAACCCAAAGAAGTATTGCGTTCGTCCAAACACTGGAATTGTCTTGCCGCGATCTACGTGTGATGTTATAGTTACCATGCAAGCGCAAAAAGAAGCTCCATCTGATATGCAATGCAAGGATAAATTTCTTCTTCAAAGTGTAAAAACAGATGATGGTACCAACCCAAAGGATATCAATGCAGAAATGTTCAATAAGGAGGCTGGGCATGTGGTCGAGGAGTGCAAATTAAGAGTGGTATATGTTTCTCCACCTCAACCACCATCTCCAGTTCCCGAAGGTTCTGAGGAAGGATCATCACCCAGGGCTTCTATTTCAGAAAATGGAAATGTCAGTAGTGCTGACTTTCCCACGGTAACAAAAGCATTTACTGACCGACCTGAGACTCAAGAAAAATCTGGAGAGGCAAAAGCTCTAATCTCAAGGCTGACAGAGGAGAAGAATAATGCTGTTCAACTAAATAACAAGCTTGCCCAGGAACTGGAGCTGCTGAAACGTGAAGCCAACAAAAGTGGTGGTGGAGTCTCTATAGTGCTTGTTATCTTGATTGGTTTGCTCGGCATAATTTTGGGTTATCTCATGAAGAAGACCTAA 1113 0.4304 MIPLCYYLLIVSRTLLSKSCTVVYKFQEPVQCTSLLLCTQPYRSVGCATNVHFLSLGGHFRRFIMMLDCVKFPNSPISILRLLDPSALLAVTQHTLTRFCASRSRCLHCRSRTVFADHHSSYINSHCPEMSTGELLSIEPLELKFPFELKKQISCSIQLSNKTDSYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDVIVTMQAQKEAPSDMQCKDKFLLQSVKTDDGTNPKDINAEMFNKEAGHVVEECKLRVVYVSPPQPPSPVPEGSEEGSSPRASISENGNVSSADFPTVTKAFTDRPETQEKSGEAKALISRLTEEKNNAVQLNNKLAQELELLKREANKSGGGVSIVLVILIGLLGIILGYLMKKT 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0556 370 Pfam MSP (Major sperm protein) domain 136 240 IPR000535 -
Lele52g0556 370 Coils Coil 309 343 - -
Lele52g0556 370 FunFam Vesicle-associated protein 1-1 130 258 - -
Lele52g0556 370 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 133 367 IPR016763 GO:0005789
Lele52g0556 370 MobiDBLite consensus disorder prediction 272 287 - -
Lele52g0556 370 MobiDBLite consensus disorder prediction 256 287 - -
Lele52g0556 370 Gene3D Immunoglobulins 129 259 IPR013783 -
Lele52g0556 370 ProSiteProfiles Major sperm protein (MSP) domain profile. 135 255 IPR000535 -
Lele52g0556 370 SUPERFAMILY PapD-like 129 270 IPR008962 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0556 Lele-ChrLele52 3420610 3426665 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0556 52 3420610 3426665 Lele52g0556 52 3420610 3426665 ECH
Lele49g0527 49 3145195 3148744 Lele52g0556 52 3420610 3426665 hybridization
Lele50g0556 50 3353411 3357122 Lele52g0556 52 3420610 3426665 hybridization