Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0521 ATGAATTTCATCTGCGTATTATATTGTAACTCTTTCGTTCCTTTTCTGTTTTGGGGTGTCTCAGAGCCTCCTGACGTTGGGAATTGGTTCTCAAGCTACGAGTATAAATCTCCCGATCCGGATTCAAATGTTAATTTTGAGGGCTCTGTTTACAAAGGATGCGAATTGGAAAATGATGAAGAGAGGGAGAAACAAGAAGTAAATTGCCCAAAAATCAGGTCGGGAGATGAGGTGGTTGGTGGGGAGAAGCTACTAAGAACAAGTACTTCTGTTATAGATGATAAGCATGACGAAGACCAGTCTTTGGCCAAGCCAAAGGATCTGGATACTTTCAGCTCTCACTCAGTACTCCTTTCAGAGCTTCCTGATATCAGAAACTGGTTCTCGAGCTATGTTTACGAGTCTCCTATGTCTGGTACAAGCAGCCATTTTGAGGATTCTGTTTCATCAAAAGAGAATGGATGTGGGCAAATGAATCTTATTATTCGAGAAAAAGATGAGCATAAAGTCAGCCGTGAGAATGTTGACACAGGAGAATCTTCAACACACATTAGCTTTTCTGATATAAGCACGAGGGCAAATCAGCTGTCGAGCAGGTGCCAACAAGGAGTTCCTTATGAAGACAATAATTTTGATCATGATTGGCACATAATCTTCATGTGCAATGATGATGGCAGTATTGAAATGAAGGAAAATGTATCTTTTGCGAGAACTTCCCATCTGGAAATGGTTTTGCAGCCTTGTTCGCAGCAAGATAGACCGTCTCAACATAACGTTAATCCAACCCGGTGCGAGTTGATGAGCTTGAGTCATGGAAGGGGTGGGTATAAAAGAGAACACACTCTAACGTTGGACATGGACAATAATTGTACGAGGCCTCCGGAATCGGTACATAAGACTGATATGAAAGAAGCTACGTCAAAAGCAATGATCCAACATGAAAATCGTGGCTCGACTGCAACAACTCCAGCTAACGTATTCTCAGAATGGAAGTCAACTCGCTTAAGAGAGAAAGAGAATATAGATATGACGTCAATGAATGGTTTTGTGACGACAAGGAAGAGCAAGGAGGGTGGAACAAAGAAAACACAAGAGAAGTCATCACCGGGTTTAACAAAAGGGGGAAGAGATTCTAAGGCGTCCAAGAAGGAAGGCGAGATGAAGAGAAAGACCTTAGCAGAAGTAACAAATATTAAAATATTTAATGAAATGGAGATTACTGGGAAATGGAAGTGCCCTCGGAAAGGTAAACCATACGTTGGGCCTGCTCTGAAGCAACTTCGGCTTGGGCAATGGCAAACTGATGCCTGCACTCCCAATCGACGGTACCCGCAGTACCATAGTCGAAGGACTCTCGTGTTGGAGCCTTTGGGTTCTGAATATGTCAAGCTTCAAAAACTTGACGACTCCGATTCGGGGATTGTTGAGGTTACCTTGGACAGGCCTAAAAACAAGAATGCCATAGACACTAAATTGATGAGAGGCATAAAGTATGTATTAGAAGTGATTCATCAGGACTCATCTGCTAATTTTGCTATTATCACTAGTTTGGTTCCAGGGGTTTACTGTGCTGGGGCTGATCTTAAGGAACGCAAGACCTTTAGTGCATCTGAGGTTCGGGAATATTCGAAAGCTCTTCGTGCCACATTCTCATATCTAGAGGCACTTCCTATACCAACTATTGCTGCAGTTGAAGGTGCAGCATTGGGTGGTGGACTTGAACTTTCCCTTGCATGTGATTTTTGTATCTGTGGAGAAGGTGCTCTCTTCGGTTTGCCAGAAACGGGACAAGCTATAATCCCTGGCCTCTTGTTTATAAGCAAATTTTATGAGCCTGAGCATCGAACTGCAGTATCTGGTTTCTTGGTACTGCAGTATCTGGTTTCTTGGTCACCTTTAAGCCTCAAGTTTCAAGCTGTGGAAAGTGCTGGAGCAACAAGAAGATTACCGAGGTTGATAAATAAGGCAATAGCAAAGGATCTGGTGTTGACTGGAAGAAGGGATAAGATGTTAATAAATGCAGCATTCCATGACTCTGCAGGTCTAGCTAATTACTGTGTTCCTGCGGGGGAAGCTTATTCAAAAGCACTGGGGGTTGCTTGGGTTATCAATGACAAGGGTCCAATAGCTATAAAAGCGGGAAAAAGAGCAATAGAGGAGGGACTGTTGGTGAGTAATCCAGAAGAAGCGGCAGATTTGGAATCTTCAGCAGAAGAAAGAGCACTTGAAATGGCTACAATGGACGAAAGCGCCTCTGCTAAAAGATGGCTTCCTCTCGAAGCTAACCCTGATGTGATGAACCAGTTCCTCTGGGGACTGGGCCTTCCAGAAAACGAGGCAGAGTGCTATGACGTGTATGGTCTGGGTGAAGAGCTACTGGAAATGGTTCCCAATCCTGTACTAGCTGTGCTTTTTCTTTATCCCTTAACCTCAAAGACTGAGGAAGAGAGGTTGCAACAGGAAAATGAGACAAAGGTGAGTGAATGGATGCATATACATGCTTGCTCTAAAAACATACGTTCTCTGACATTTGACCATTTACGTGTTCCATTACCTATTAAAATAGCTCAAGAAGCTTTACTTTTGGGGGGCATCTCTAGAGTATATTTTATGAAGCAGACTGTGGGAAATGCTTGTGGTACTATAGGACTTCTTCATGCTCTTGGGAACATAAAATCTGAGATCAAACTTACGGAGGGATCATTCTTTGACAGGTTCTTTAAAGCTACTGCAAACGTGGACCCATTACAGCGTGCAGCATTTCTTGAGAATGACAGAGAAATGGAAGTTGCTCATTCAGTAGCTGCCACTGCTGGTGATACAGAGATTGATCTCAAAAGATAA 2844 0.4307 MNFICVLYCNSFVPFLFWGVSEPPDVGNWFSSYEYKSPDPDSNVNFEGSVYKGCELENDEEREKQEVNCPKIRSGDEVVGGEKLLRTSTSVIDDKHDEDQSLAKPKDLDTFSSHSVLLSELPDIRNWFSSYVYESPMSGTSSHFEDSVSSKENGCGQMNLIIREKDEHKVSRENVDTGESSTHISFSDISTRANQLSSRCQQGVPYEDNNFDHDWHIIFMCNDDGSIEMKENVSFARTSHLEMVLQPCSQQDRPSQHNVNPTRCELMSLSHGRGGYKREHTLTLDMDNNCTRPPESVHKTDMKEATSKAMIQHENRGSTATTPANVFSEWKSTRLREKENIDMTSMNGFVTTRKSKEGGTKKTQEKSSPGLTKGGRDSKASKKEGEMKRKTLAEVTNIKIFNEMEITGKWKCPRKGKPYVGPALKQLRLGQWQTDACTPNRRYPQYHSRRTLVLEPLGSEYVKLQKLDDSDSGIVEVTLDRPKNKNAIDTKLMRGIKYVLEVIHQDSSANFAIITSLVPGVYCAGADLKERKTFSASEVREYSKALRATFSYLEALPIPTIAAVEGAALGGGLELSLACDFCICGEGALFGLPETGQAIIPGLLFISKFYEPEHRTAVSGFLVLQYLVSWSPLSLKFQAVESAGATRRLPRLINKAIAKDLVLTGRRDKMLINAAFHDSAGLANYCVPAGEAYSKALGVAWVINDKGPIAIKAGKRAIEEGLLVSNPEEAADLESSAEERALEMATMDESASAKRWLPLEANPDVMNQFLWGLGLPENEAECYDVYGLGEELLEMVPNPVLAVLFLYPLTSKTEEERLQQENETKVSEWMHIHACSKNIRSLTFDHLRVPLPIKIAQEALLLGGISRVYFMKQTVGNACGTIGLLHALGNIKSEIKLTEGSFFDRFFKATANVDPLQRAAFLENDREMEVAHSVAATAGDTEIDLKR 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0521 947 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 796 808 IPR001578 GO:0004843|GO:0006511
Lele52g0521 947 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 758 775 IPR001578 GO:0004843|GO:0006511
Lele52g0521 947 Pfam Ubiquitin carboxyl-terminal hydrolase, family 1 756 943 IPR001578 GO:0004843|GO:0006511
Lele52g0521 947 MobiDBLite consensus disorder prediction 338 389 - -
Lele52g0521 947 SUPERFAMILY Cysteine proteinases 754 941 IPR038765 -
Lele52g0521 947 CDD crotonase-like 471 700 - -
Lele52g0521 947 SUPERFAMILY ClpP/crotonase 642 743 IPR029045 -
Lele52g0521 947 Pfam Enoyl-CoA hydratase/isomerase 471 604 IPR001753 GO:0003824
Lele52g0521 947 Gene3D - 460 752 - -
Lele52g0521 947 SUPERFAMILY ClpP/crotonase 469 605 IPR029045 -
Lele52g0521 947 PANTHER ENOYL-COA HYDRATASE-RELATED 460 742 - -
Lele52g0521 947 ProSitePatterns Enoyl-CoA hydratase/isomerase signature. 561 581 IPR018376 GO:0003824
Lele52g0521 947 Gene3D - 753 947 IPR036959 GO:0004843|GO:0006511
Lele52g0521 947 Coils Coil 938 947 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0521 Lele-ChrLele52 3170217 3177882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0521 469 667 Acyl Lipid Metabolism Gene Families AT5G43280 24.645 2.14e-12 65.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0489 49 2912683 2915983 Lele52g0521 52 3170217 3177882 hybridization
Lele50g0521 50 3107505 3110943 Lele52g0521 52 3170217 3177882 hybridization