Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0489 ATGGCTACAATGGACGAAAGCGCCTCTGCTAAAAGATGGCTTCCTCTCGAAGCCAACCCTGATGTTATGAACCAGTTCCTCTGGGGACTGGGCCTTCCAGAAAACGAGGCAGAGTGCTATGATGTGTATGGTCTAGATGAAGAACTACTGGAAATGGTTCCCAAGCCTGTACTAGCTGTGCTTTTTCTTTATCCCTTAACCTCAAAGACTGAGGAGGAGAGGTTGCAACAGGAAAATGAAAAAAAGGAATACAGATCTAGAGTATATTTTATGAAGCAGACTGTGGGAAATGCTTGTGGTACTATAGGACTTCTTCATGCTCTTGGCAACATAAAATCTGAGATCAAACTTACGGAGGGATCATTCTTTGATAGGTTCTTTAAAGCTACTGCAAACATGGACCTATTACAGCGTGCAGCATTTCTTGAGAATGACAGAGAAATGGAAGTTGCTCATTCAGTAGCTGCGACTGCTGGTGATACAGAGGCATCAGTTAATGTGGACACTCATTTCATCTGCTTTGCTTGTGTGGATGGTGAACTTTATGAGCTTGATGGAAGAAAGTCAGGACCTATATCCCATGGTCAATCCTCACCAAATACTCTATTGAGGGATGCAGCTAAGGTCATACAGGGCATGATCCAGAAAAATCCTGACTCTCTTAACTTCAATGTGATGGCCATTTCAAAGAAATCTGGAGATGGAAAATAA 711 0.4262 MATMDESASAKRWLPLEANPDVMNQFLWGLGLPENEAECYDVYGLDEELLEMVPKPVLAVLFLYPLTSKTEEERLQQENEKKEYRSRVYFMKQTVGNACGTIGLLHALGNIKSEIKLTEGSFFDRFFKATANMDLLQRAAFLENDREMEVAHSVAATAGDTEASVNVDTHFICFACVDGELYELDGRKSGPISHGQSSPNTLLRDAAKVIQGMIQKNPDSLNFNVMAISKKSGDGK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0489 236 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 11 231 IPR001578 GO:0004843|GO:0006511
Lele49g0489 236 SUPERFAMILY Cysteine proteinases 11 230 IPR038765 -
Lele49g0489 236 CDD Peptidase_C12_UCH_L1_L3 13 228 - -
Lele49g0489 236 FunFam Ubiquitin carboxyl-terminal hydrolase 7 231 - -
Lele49g0489 236 Pfam Ubiquitin carboxyl-terminal hydrolase, family 1 13 214 IPR001578 GO:0004843|GO:0006511
Lele49g0489 236 Gene3D - 7 231 IPR036959 GO:0004843|GO:0006511
Lele49g0489 236 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 165 176 IPR001578 GO:0004843|GO:0006511
Lele49g0489 236 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 15 32 IPR001578 GO:0004843|GO:0006511
Lele49g0489 236 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 53 65 IPR001578 GO:0004843|GO:0006511
Lele49g0489 236 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 93 110 IPR001578 GO:0004843|GO:0006511
Lele49g0489 236 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 181 191 IPR001578 GO:0004843|GO:0006511
Lele49g0489 236 Coils Coil 67 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0489 Lele-ChrLele49 2912683 2915983 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0489 49 2912683 2915983 Lele51g0505 51 2969183 2972001 hybridization
Lele49g0489 49 2912683 2915983 Lele52g0521 52 3170217 3177882 hybridization