Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1598 ATGAGAGAAAGTCCCGACATCCAAATCCCAATTCCCAAGGCCGTTTGCACCTCACCAAGAGCCGACAAAGTGGGCCCACCTCCTGTGCCTGCCAATAAAAGAAACTTCAGGGCCAAAAATATGGCTATTCCTTATCCCCATTTCATTGCGTCCGAGAAAGCAGCCATAGAGGCGGGTCTTTTGGTGCCTTCGTCACCATCGTCGTCCCTATCTCCTCCTCCCGTGCTTCTAACGCAGGACGATTTGAAGAAAATCGCCGCCTACAAAGCCGTGGAGTACGTTGAATCCGGCATGGTTCTGGGTTTGGGAACCGGGTCCACGGCGAAGCATGCAGTGGACCGAATCGGCGAGCTTTTGCGTCAAGGCAAGCTCAAGAATATTGTAGGAATACCCACGTCGAAGAAGACCCACGAGCAGGCGGTTTCCTTGGGGATTCCATTGTCAGATCTCGATTCGCACCCAACCTTGGATCTAGCGATTGACGGAGCGGATGAAGTCGATCCGTTTTTGAACTTAGTGAAAGGGCGAGGTGGGTCGCTTCTGAGAGAGAAAATGGTAGAGGGTGCTTGCAAGAAGTTCGTTGTGATCGTGGATGAATCCAAGTTGGTGAATTATTTGGGAGGTAGTGGACTGGCAATGCCTGTTGAGATTATACCCTTTTGTTGGAAATTCACTGCTGCCAGGCTTCAAAAATTGTTTGAGGAGTCAGGTTGTGTTGCTAAGTTGAGGACTCTTGGGGAGAAAGATGAACCATTTGTAACTGATAACGGAAATTACATTGTAGACTTGTACTTTAAGAAGAGTATTGGGGATCTGAAGGTTGCCAGTGATGAAATTCTTCAGCATGCTGGCGTTGTGGAGCATGGCATGTTTCTGGACATGGCCACTACAGTCATTATTGCAGAGCTACCAAAGCACAAAGCAATATCAATACGTTTATTGGTTAATGGGACATTTGTAGAAATTTTGCTTCAAAGGAAGCATGACTTGAAAAACGGCTCTCTTTTCTTCACACACTTTAATTGCCAGATTCCTCAGCTATTCCTTGCCCTCTGA 1056 0.4735 MRESPDIQIPIPKAVCTSPRADKVGPPPVPANKRNFRAKNMAIPYPHFIASEKAAIEAGLLVPSSPSSSLSPPPVLLTQDDLKKIAAYKAVEYVESGMVLGLGTGSTAKHAVDRIGELLRQGKLKNIVGIPTSKKTHEQAVSLGIPLSDLDSHPTLDLAIDGADEVDPFLNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVNYLGGSGLAMPVEIIPFCWKFTAARLQKLFEESGCVAKLRTLGEKDEPFVTDNGNYIVDLYFKKSIGDLKVASDEILQHAGVVEHGMFLDMATTVIIAELPKHKAISIRLLVNGTFVEILLQRKHDLKNGSLFFTHFNCQIPQLFLAL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1598 351 CDD RPI_A 82 302 IPR004788 GO:0004751|GO:0009052
Lele50g1598 351 Gene3D - 205 289 - -
Lele50g1598 351 Hamap Ribose-5-phosphate isomerase A [rpiA]. 79 309 IPR020672 GO:0004751|GO:0009052
Lele50g1598 351 SUPERFAMILY NagB/RpiA/CoA transferase-like 78 262 IPR037171 -
Lele50g1598 351 PANTHER RIBOSE-5-PHOSPHATE ISOMERASE 3, CHLOROPLASTIC-RELATED 69 302 - -
Lele50g1598 351 SUPERFAMILY D-ribose-5-phosphate isomerase (RpiA), lid domain 211 292 - -
Lele50g1598 351 Pfam Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 128 302 IPR004788 GO:0004751|GO:0009052
Lele50g1598 351 TIGRFAM rpiA: ribose 5-phosphate isomerase A 82 302 IPR004788 GO:0004751|GO:0009052
Lele50g1598 351 FunFam Ribose-5-phosphate isomerase A 82 215 - -
Lele50g1598 351 Gene3D - 82 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1598 Lele-ChrLele50 21068513 21073159 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1598 50 21068513 21073159 Lele50g1598 50 21068513 21073159 ECH
Lele50g1598 50 21068513 21073159 Lele51g1251 51 8287848 8288663 hybridization
Lele50g1598 50 21068513 21073159 Lele52g1551 52 19443164 19443979 hybridization