Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0880 ATGGCTTCTCCAACACAGTGTCCACCCTTTGAATTCTCTGCAAAATATTACCAGGTTTCTGAAAATGGAGGTGGCTGTGTGAGGCAGAGCAGTTTCTTTGAAGGCAAACCAGTGCTTAATCAGGGAGTTGGGTACTCTGTCATTCTTGGTTTTGGTGCTTTCTTCGCCATCTTCACCTCTTTCTTGGTATGGTTGGAGAAGCGATATGTTGGGTCCCGCCACACTTCTGAATGGTTCAATACTGCAGGAAGAAGTGTTAAAACTGGACTCATTGCTAGTGTCATTGTGTCTCAATGGACATGGGCTGCGACAATCCTGCAAAGTTCTAACGTTGCTTGGGAGTATGGAATTAGTGGGCCTTTCTGGTATGCTAGTGGAGCTACTATACAGGTATTATTGTTTGGAATCATGGCCATAGAGATTAAAAGAAAGGCTCCTCATGCTCATACCGTTTGTGAAATTGTCAAAGCCCGATGGGGAACAGCTGCGCACGTTGTATTCCTCTTCTTCTGCTTCTTGACCAACATCATTGTAACAGCCATGTTGCTTCTAGGGGGTTCTGCTGTTGTAAATGCGTTGACTGGTGTCAACATTTTTGCTGCTAGCTTCCTAATACCACTTGGAGTTATCGTCTATACTCTAGCCGGAGGCCTCAAAGCCACGTTCTTGGCAAGCTATATACATTCTGTCATAGTGCATATTGTTTTGGTCATTTTTGTGTACCTTGTGTATACGTCGAGCAGTGAGCTCGGTAGCCCCGGTGTGATCTACGACCGTTTACTAGAGGTTGCAAGCATATCAAGAACATGCCATGAGCCTATGTCACACCATGGCCAATCATGTGGTCCAGTTAATGGGAATTACAAAGGATCTTACCTGACAATGCTGAGTTCAGGTGGTTTGGTTTTTGGGATTATAAATATTGTTGGCAACTTTGGTACAGTCTTTGTGGATAATGGATATTGGGTGAGTGCCATCGCTGCAAGACCTTCATCAACTCACAAGGGTTATTTGTTGGGAGGATTGGTCTGGTTTGCTGTGCCATTTTCTTTGGCTACTTCATTAGGTCTTGGAGCTCTAGCCCTTGATTTGCCCATAAATGAAAGCGAGGCAGGTCATGGACTTGTTCCCCCTGCTACTGCAGTGGCTTTAATGGGAAAAGGAGGATCTATTCTTCTTCTCACAATGCTTTTTATGGCAGTGACTTCAGCTGGATCATCAGAACTAATTGCAGTGTCCTCTTTATGCACATATGATATCTACCGTACTTACATAAATCCCAATGCAAGTGGAAAGAAAATCCTGAGAGTGTCAAGAGGGGTAGTCCTAGGATTTGGGTGTTTCATGGGATTGTTAGCAGTTATCCTAAACAAAGCAGGCGTTTCTCTTGGTTGGATGTACCTTGCAATGGGAGTTCTTATTGGTTCAGCTGTTCTTCCCATTGCATTCATGCTTCTATGGAGCAGAGCAAATGCAAGTGGGGCAATCCTTGGAACAATTATGGGTTGTATCCTAGGAATTATCACATGGTTGTCTGTCACTAAGATCGAGTATGGCTTGATAAACCTCGATACAACCGGTAGAAATGCGCCTATGCTAGCGGGAAACCTTGTCTCAATCCTAACTGGTGGAGTAATTCATGCTATCAGCAGCATGTTATGGCCTCAGAACTATGACTGGACTACCACCAAGCAAATCACAACAGTTGAAAAGGAAAAAACTGATCTTCCAGCACAAGAGTTCAGAGAAGAGAAGCTGCTGAAAGCCAAAGCATGGATAGTGAGGTGGGGAATTGGCTTCACTATTGTGATAGCTATCATATGGCCCATTCTCTCCCTCCCCGCAGGGCAATTTAGTAAAGGGTACTTCTATTTCTGGGCTGTGATTGCAATAGGGTGGGGAACTATTGGTTCTGCAGTGATAATAGCTTTACCAATAACAGAGAGTTGGGAAACAATCCACACAGTGATTATGGGGATGTTTACAAATGACAGACTCATTGAGAAGGTTGAAGAGTTGAATTTGAAGTTGCAGACAATCATACAAGCGATCCCAGAAGCAGAGAGACTTTATTTGCTTGAGAAGGAGAAGGCAAAGAAAGTTGAAGCCTCACAGCAACAAGAAGCTGCTTCTCTTCCTGCTTGA 2145 0.4401 MASPTQCPPFEFSAKYYQVSENGGGCVRQSSFFEGKPVLNQGVGYSVILGFGAFFAIFTSFLVWLEKRYVGSRHTSEWFNTAGRSVKTGLIASVIVSQWTWAATILQSSNVAWEYGISGPFWYASGATIQVLLFGIMAIEIKRKAPHAHTVCEIVKARWGTAAHVVFLFFCFLTNIIVTAMLLLGGSAVVNALTGVNIFAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHIVLVIFVYLVYTSSSELGSPGVIYDRLLEVASISRTCHEPMSHHGQSCGPVNGNYKGSYLTMLSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLPINESEAGHGLVPPATAVALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPNASGKKILRVSRGVVLGFGCFMGLLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWSRANASGAILGTIMGCILGIITWLSVTKIEYGLINLDTTGRNAPMLAGNLVSILTGGVIHAISSMLWPQNYDWTTTKQITTVEKEKTDLPAQEFREEKLLKAKAWIVRWGIGFTIVIAIIWPILSLPAGQFSKGYFYFWAVIAIGWGTIGSAVIIALPITESWETIHTVIMGMFTNDRLIEKVEELNLKLQTIIQAIPEAERLYLLEKEKAKKVEASQQQEAASLPA 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0880 714 Coils Coil 663 690 - -
Lele50g0880 714 Gene3D Sodium/glucose cotransporter 68 586 IPR038377 -
Lele50g0880 714 TIGRFAM sss: transporter, solute:sodium symporter (SSS) family 79 502 IPR001734 GO:0016020|GO:0022857|GO:0055085
Lele50g0880 714 Pfam Sodium:solute symporter family 80 502 IPR001734 GO:0016020|GO:0022857|GO:0055085
Lele50g0880 714 ProSiteProfiles Sodium:solute symporter family profile. 44 516 IPR001734 GO:0016020|GO:0022857|GO:0055085
Lele50g0880 714 FunFam Urea active transporter 67 577 - -
Lele50g0880 714 CDD SLC5sbd_DUR3 45 554 - -
Lele50g0880 714 PANTHER - 15 698 IPR031155 GO:0015204|GO:0016020|GO:0071918
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0880 Lele-ChrLele50 5546185 5549947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0880 7 702 Organic Solute Cotransporters AT5G45380 77.318 0.0 1105
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0880 50 5546185 5549947 Lele50g0880 50 5546185 5549947 ECH
Lele50g0880 50 5546185 5549947 Lele51g0862 51 5295947 5299555 hybridization
Lele50g0880 50 5546185 5549947 Lele52g0862 52 5584229 5588024 hybridization