Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0856 ATGCTATCCGACGTCAAGGATTCCCCGTCACCGTCCTTCGCCGGCAAACAAACCCCCACCTCCTCATCTCCTTCCTTACTCATCCAATGCGACGCCGTGGTCGTCGGTTCCGGATCCGGCGGCGGTGTAATAGCCGGAGTCCTAGGAAAAGCCGGCTACAAAGTTCTGGTCTTGGATAAAGGAAACTACTCTGCAAGAAACAATCTCACTCTTCTCGAAGGACCAAGCATGGATCAAATGTACCTTTCTAATGGCCTAATCGCTACTTATGATATGGGCATGTTTATACTTGCAGGATCAACGGTCGGCGGAGGATCTGCAATTAACTGGTCGGCGTGTATCAAAACCCCAAAACACGTCTGCAAGGAATGGAGCCGACAACACGGGCTTGAACTTTTCAAGAGCAAATTATACAGAGAAGCTTTAGATGTTGTCTCAGAGAAGATGAGAGTTCAATCTGAAATCAACGAAGAAGGTTTCAACAATGCTGTTCTAAGACGAGGTTGTCAAGAAATGGGGTACCCAGTGAGCACGATTCCTCGGAATTCTCCACCTGATCATTACTGTGGCTGGTGTGGTATGGGCTGTAAAGATGGGAAGAAGAAGGGAACATCAGAGACATGGCTTGTCGACGTAGTTAAACCCGGAAACGGAGCTATTCTTCCGAGCTGCACCTCCATTAAAGTCATCCACAAGAAACACAAAGACAGAGATCGAAAAACAGCAAAAGGAGTAGTTTTTGAGTATGAATATAAAGGAGTTAAAGACATTTGTATGGTTGAATCCAAGGTTACAATTCTCGCATGTGGTGCATTATGTACTCCAGAATTGCTCAAAAGAAGTGTGTTGAAGAACAAGAACAGAGGAAAACACTTAGATCTTCATCTAGTAATGATGGCTTGGGGATATTTCCCAGACAAACCTTCTTCATCTAATGATGATTCCGAGGTTTGGCCTGAGGAACATAAGAAGAGCTATGAAGGAGAGATAATGACAGCAATGTCAAAAGTAGTAGCAGATTTTGACAGATCTGGATATGGTGCTGTGATTCAAACACCAGCATTACATCCTGGCGTGTTCTCTCTTCTAATGCCATGGGTTTCTGGGACAAACATAAAGGAAAGAATGCAAAGATTCTCACGAACCGCCCATATATTCGCTCTCGCGAGAGATCAAGGATCAGGGACAGTGAGGTCTCAAAGCAACATAAGTTACAAGATGAAAGACAGTGATGAGAAGAATCTGCGGAAAGGGATAGAGAAGGTGCTGAAGATTCTTGCAGCAGCTGGGGCTGAAGAAATTGGAACACATAATGATAAAGGAAGGAGCTTGAATGTGAAGAAGGTGAGTTATCATGAGTTTCAGAAGTTTGTGAAGGAGGAGAGTTCAAGGACGTTGACAGACCTGTCAACTCTATTATGCTCAGCTCATCAGATGGGGGCGAATCCGGCAGGATCCGCCGTGGAATCTGACGGGGGAGACATGGGAGGTGGAGGGACAGTATATCCCATAATGTTTTCTGATGTACCAAAGGAAATGTTCACAGGGTTTAAGGAATTTAGTTCACAGCCTTAA 1575 0.4489 MLSDVKDSPSPSFAGKQTPTSSSPSLLIQCDAVVVGSGSGGGVIAGVLGKAGYKVLVLDKGNYSARNNLTLLEGPSMDQMYLSNGLIATYDMGMFILAGSTVGGGSAINWSACIKTPKHVCKEWSRQHGLELFKSKLYREALDVVSEKMRVQSEINEEGFNNAVLRRGCQEMGYPVSTIPRNSPPDHYCGWCGMGCKDGKKKGTSETWLVDVVKPGNGAILPSCTSIKVIHKKHKDRDRKTAKGVVFEYEYKGVKDICMVESKVTILACGALCTPELLKRSVLKNKNRGKHLDLHLVMMAWGYFPDKPSSSNDDSEVWPEEHKKSYEGEIMTAMSKVVADFDRSGYGAVIQTPALHPGVFSLLMPWVSGTNIKERMQRFSRTAHIFALARDQGSGTVRSQSNISYKMKDSDEKNLRKGIEKVLKILAAAGAEEIGTHNDKGRSLNVKKVSYHEFQKFVKEESSRTLTDLSTLLCSAHQMGANPAGSAVESDGGDMGGGGTVYPIMFSDVPKEMFTGFKEFSSQP 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0856 524 Pfam GMC oxidoreductase 31 290 IPR000172 GO:0016614|GO:0050660
Lele50g0856 524 SUPERFAMILY FAD/NAD(P)-binding domain 27 310 IPR036188 -
Lele50g0856 524 MobiDBLite consensus disorder prediction 1 23 - -
Lele50g0856 524 Gene3D - 16 352 IPR036188 -
Lele50g0856 524 PANTHER LONG-CHAIN-ALCOHOL OXIDASE 20 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0856 Lele-ChrLele50 5348052 5350039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0856 22 492 Acyl Lipid Metabolism Gene Families AT4G19380 59.748 0.0 531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0856 50 5348052 5350039 Lele50g0856 50 5348052 5350039 ECH
Lele50g0856 50 5348052 5350039 Lele51g0843 51 5131203 5140164 hybridization
Lele50g0856 50 5348052 5350039 Lele52g0843 52 5408885 5410503 hybridization