Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1234 ATGGCTATTCCTTATCCCCATTTCATTGCGTCTGATAAAGCAGCCATAGAGGCGGGTCTTTTGGTGCCTTCGTCACCATCGTCGTCCCTATCTCCTCCTCCTGTTATTCTAACGCAGGACGATTTGAAGAAAATCGCCGCCTACAAAGCCGTTGAGTACGTTGAATGCGGCATGGTTCTGGGTTTGGGAACTGGGTCCACGGCGAAGCACGCAGTGGACCGAATCGGCGAGCTTTTGCGTCAAGGCAAGCTCAAGAACATTGTAGGAATACCCACGTCGAAGAAGACTCACGAGCAGGCGGTCTCATTGGGGATTCCGTTGTCAGATCTCGATTCGCACCCAACCTTGGATCTAGCGATTGACGGAGCAGATGAAGTTGATCCATTTTTGAACTTAGTGAAAGGGCGAGGTGGGTCGCTTCTGAGAGAGAAAATGGTAGAGGGTGCTTGCAAGAAGTTCGTTGTCATTGTGGATGAGTCCAAGTTGGTGAATTATTTGGGAGGTAGTGGGCTGGCTATGCCTGTTGAGATTATACCCTTTTGTTGGAAATTCACTGCTGCCAGGCTTCAAAAATTGTTTGAGGAGTCAGGTTGTGTTGCTAAGTTGAGGACTTCTGGAGAGAAAGATGAACCATTTGTAACTGATAACGGAAATTACATTGTAGACTTGTACTTTAAGAAGAGTATTGGGGATCTGAAGGTTGCCAGTGATGCAATTCTTCAGCTTGCTGGCGTTGTGGAGCACGGAATGTTTCTGGACATGGCCACTACAGTCATTATTGCAGGTGAACTTGGGATAACCATTAAGAATAAGTAG 816 0.4718 MAIPYPHFIASDKAAIEAGLLVPSSPSSSLSPPPVILTQDDLKKIAAYKAVEYVECGMVLGLGTGSTAKHAVDRIGELLRQGKLKNIVGIPTSKKTHEQAVSLGIPLSDLDSHPTLDLAIDGADEVDPFLNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVNYLGGSGLAMPVEIIPFCWKFTAARLQKLFEESGCVAKLRTSGEKDEPFVTDNGNYIVDLYFKKSIGDLKVASDAILQLAGVVEHGMFLDMATTVIIAGELGITIKNK 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1234 271 Pfam Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 88 263 IPR004788 GO:0004751|GO:0009052
Lele49g1234 271 FunFam Ribose-5-phosphate isomerase A 42 175 - -
Lele49g1234 271 TIGRFAM rpiA: ribose 5-phosphate isomerase A 42 265 IPR004788 GO:0004751|GO:0009052
Lele49g1234 271 Hamap Ribose-5-phosphate isomerase A [rpiA]. 39 269 IPR020672 GO:0004751|GO:0009052
Lele49g1234 271 Gene3D - 42 263 - -
Lele49g1234 271 SUPERFAMILY D-ribose-5-phosphate isomerase (RpiA), lid domain 171 252 - -
Lele49g1234 271 PANTHER RIBOSE-5-PHOSPHATE ISOMERASE 3, CHLOROPLASTIC-RELATED 29 270 - -
Lele49g1234 271 SUPERFAMILY NagB/RpiA/CoA transferase-like 38 222 IPR037171 -
Lele49g1234 271 CDD RPI_A 42 262 IPR004788 GO:0004751|GO:0009052
Lele49g1234 271 Gene3D - 165 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1234 Lele-ChrLele49 8265161 8265976 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1234 49 8265161 8265976 Lele49g1234 49 8265161 8265976 ECH
Lele49g1234 49 8265161 8265976 Lele51g1251 51 8287848 8288663 hybridization
Lele49g1234 49 8265161 8265976 Lele52g1551 52 19443164 19443979 hybridization