Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0003 ATGGCACGCTGTACGCGTGGGCAACATCACCTGTTCCTAATTTCTATAAAAAAAACCTTACGTAGCTTCCCCCTTCTACTCGAAGACTCTCCCTTCTATACACACTCCTCCTCCTCCTCCTCCTCCTCTCCACTTCCTCTTCTTCCTTCCTTCGCCGGCCTCATGGACCTTCCCCGGCGACCTCTTACCTCCCACAAACCTCCCCATTTGCCCCCCAATAAGCCTCCTTCCGATTCCCCCTCCTTCCCCTTCTCTCCCCTTTACTTCACCAATGCTCTCTTCTTCTCCCTTTTCTTCTCCGTCTCCTATTTTCTCCTTCACCGCTGGCGCGACAAGATCCGCACGTCCACTCCCCTCCACGTCGTCACCCTCTCTGAGATTGCTGCCATTCTCTCTTTCCTTGCCTCCATCGTCTACCTTCTTGGTTTCTTCGGCATTGGCTTTATCCACCCCATTTCTTCTCGTTCTTCCTCCGATGACGACCTCGATTTGGACGACGACGATGCTATCATTTCCAAGGACGATAGCCGCAATCCTGGCCCTTGCCCAGCCGCCCTCATCGATTGCTCTGTCGTCTCTCCTCCCACTCTACAACTCACCCAGAAGCTCGATGTGCCTGTTCCCCCCAAAAGCTTCGACAACGCCCCCCCTCCCTTCTCTCTCGACGACGAAGAAATTGTCCGCTCCGTGATCTTGGGCTCCATTCCGTCCTACTCGCTCGAATCAAAGTTGGGTGATTGTCGTCGGGCAGTAGCCATTCGAAGAGAGGTCGCGCAGAGAATTACCGGCAAGTCCCTCAAAGGTTTGCCCGTCGAAGGGTTCGATTACAATTCGATACTGGGACAGTGTTGTGAGATGCCTATCGGGTATGTGCAGATCCCCGTGGGGGTGGCGGGTCCGTTGTTGCTTGATGGGGTGGAGTACACGGTGCCTATGGCCACCACGGAGGGTTGCCTTGTCGCCAGCACCAACCGAGGTTGTAAGGCCATTTTCGTTTCTGGCGGAGCTTCTTCTATTTTGCTCGCGGATGGGATGACTAGAGCTCCTGTGGTGAGGTTCTCCACAGTCAAGAGAGCCGCTCAATTAAAGTTCTTCCTGGAGGATCCTCTTAATTTGGACTCGCTTGCCGTCGTTTTCAACAAGTCAAGCAGATTTGCCAGGTTACAGAGTGTTCAGTGTGCATTGGCAGGCAAGAATGTATACATCAGATTCCGATGCAGCACCGGGGACGCCATGGGGATGAACATGGTATCCAAAGGCGTCCAGAATGTCCTTGATTATCTCCGAGAAGGCTTCTCAGACATGGATGTTATTGGCGTTTCTGGAAATTATTGCTCAGACAAGAAAGCAGCAGCGGTAAACTGGATTGAAGGGCGTGGCAAATCTGTGGTCTGTGAAGCAATAATCAAGGAAGAGGTGGTGACAAAAGTTTTGAAGACTAGCGTGGAGTCCCTGGTTGAGCTTAATATGCTCAAAAACCTTACTGGGTCAGCAGTGGCTGGTGCTCTCGGCGGGTTCAATGCCCATGCAAGCAATATTGTCTCCGCTATCTACATAGCCACTGGTCAGGACCCCGCCCAAAATGTGGAGAGTTCTCACTGCATCACCATGATGGAAGCTGTGAATGACGGCAAGGACCTTCACATCTCCGTCACCATGCCTTCCATTGAGGTGGGTACAGTCGGAGGGGGTACCCAACTAGCATCCCAGTCAGCTTGTCTTAATTTACTTGGGGTAAAGGGAGCCAGTAAAGAGTCTCCTGGCGCCAATTCTAGGCTTCTAGCCACCATAGTAGCTGGTTCGGTTCTTGCTGGGGAGCTTTCGCTCTTGTCTGCCATTGCAGCGGGGCAGCTTGTTCGGAGCCACATGAAATACAACAGATCAAGCAAGGATGTCCCCCAAGTTGTCTCCTGA 1914 0.5256 MARCTRGQHHLFLISIKKTLRSFPLLLEDSPFYTHSSSSSSSSPLPLLPSFAGLMDLPRRPLTSHKPPHLPPNKPPSDSPSFPFSPLYFTNALFFSLFFSVSYFLLHRWRDKIRTSTPLHVVTLSEIAAILSFLASIVYLLGFFGIGFIHPISSRSSSDDDLDLDDDDAIISKDDSRNPGPCPAALIDCSVVSPPTLQLTQKLDVPVPPKSFDNAPPPFSLDDEEIVRSVILGSIPSYSLESKLGDCRRAVAIRREVAQRITGKSLKGLPVEGFDYNSILGQCCEMPIGYVQIPVGVAGPLLLDGVEYTVPMATTEGCLVASTNRGCKAIFVSGGASSILLADGMTRAPVVRFSTVKRAAQLKFFLEDPLNLDSLAVVFNKSSRFARLQSVQCALAGKNVYIRFRCSTGDAMGMNMVSKGVQNVLDYLREGFSDMDVIGVSGNYCSDKKAAAVNWIEGRGKSVVCEAIIKEEVVTKVLKTSVESLVELNMLKNLTGSAVAGALGGFNAHASNIVSAIYIATGQDPAQNVESSHCITMMEAVNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGANSRLLATIVAGSVLAGELSLLSAIAAGQLVRSHMKYNRSSKDVPQVVS 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0003 637 Gene3D - 294 622 IPR023074 GO:0004420
Lele49g0003 637 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 344 460 IPR009023 -
Lele49g0003 637 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 218 616 IPR009029 GO:0015936|GO:0016616
Lele49g0003 637 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 344 460 - -
Lele49g0003 637 CDD HMG-CoA_reductase_classI 224 627 IPR004554 GO:0004420|GO:0005515|GO:0008299
Lele49g0003 637 Pfam Hydroxymethylglutaryl-coenzyme A reductase 250 627 IPR002202 GO:0004420|GO:0015936
Lele49g0003 637 Gene3D - 344 460 IPR009023 -
Lele49g0003 637 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 222 627 IPR004554 GO:0004420|GO:0005515|GO:0008299
Lele49g0003 637 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 60 631 IPR002202 GO:0004420|GO:0015936
Lele49g0003 637 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 558 565 IPR023076 GO:0004420
Lele49g0003 637 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 492 518 IPR002202 GO:0004420|GO:0015936
Lele49g0003 637 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 283 304 IPR002202 GO:0004420|GO:0015936
Lele49g0003 637 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 441 466 IPR002202 GO:0004420|GO:0015936
Lele49g0003 637 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 401 419 IPR002202 GO:0004420|GO:0015936
Lele49g0003 637 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 546 567 IPR002202 GO:0004420|GO:0015936
Lele49g0003 637 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 310 330 IPR002202 GO:0004420|GO:0015936
Lele49g0003 637 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 446 622 - -
Lele49g0003 637 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 403 417 IPR023076 GO:0004420
Lele49g0003 637 Gene3D - 219 293 IPR023282 GO:0004420
Lele49g0003 637 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 219 293 - -
Lele49g0003 637 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 223 627 IPR002202 GO:0004420|GO:0015936
Lele49g0003 637 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 612 625 IPR023076 GO:0004420
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0003 Lele-ChrLele49 29575 32995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0003 58 632 Lipid Metabolism Gene Families AT1G76490 70.087 0.0 816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0003 49 29575 32995 Lele51g0004 51 22900 26187 hybridization