Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0126 ATGATTCTTGATTATCATATTAATTTTCACCTACAGCTTGTTGTTGATCCTAATAATACAGGAATTGAGAACGAGCATTCGGAGGAAGAAAGGAAGAAAAGGGTAGGACCTATAAAGAAGGTGGCAATCAATGCTTCAAATAGGTTCAAGAGTTCCTTCACAAAGAGAGGTCGAAGGCACAGCAGGGTTGTGTCTCTGTCAATTGAGGATGACCTTGATGCTGAAGAGTTGCAGGCAGTCGATGCTTTTCGCCAAATGCTTGTTTTGGAAGAACTGTTGCCTGCCAAGCACGATGATCATCATATGATGCTAAGATTCTTGAAAGCAAGGAAGTTTGACTTTGAGAAAACAAAGCAAATGTGGGCAGACATGCTTCAATGGAGAAAAGAATTCGGTGCTGACACTATCATGGAGGATTTTGAGTTTAAGGAACTAGACGAAGTTATGAAATACTACCCACAAGGGCATCATGGAGTTGATAAGGATGGAAGACCAGTTTACATTGAAAAACTGGGTCAGGTTGATCCCAACAAGCTGTTACAAGTGACAACAATGGATCGCTATGTTAAGTACCACGTAAGAGAGTTCGAGAGGACCTTCGTTGTCAAGTTCCCAGCCTGTTCAATTGCAGAAAAGAAACACATTGACCAAAGCACAACTATTTTGGACGTCCAAGGAGTGGGACTGAAAAATTTCAACAAAGCTGCAAGGGATCTGATTCAGAGGCTTCAGAAGATTGATGGTGACAACTATCCTGAGACCTTGAACCGCATGTTCATCATCAATGCTGGCTCTGGATTTAGGCTCTTGTGGAACACTGTGAAGTCCTTCCTTGACCCGAAGACCTCTGCAAAAATCCATGTCCTTGGCAACAAATACCAGAGCAAGTTGCTTGAAATCATTGAGGCCAGTGAACTTCCAGAGTTCTTGGGAGGTACTTGTACTTGTGCAGATAAAGGTGGTTGCATGCTCTCAGACAAGGGACCATGGAATGACCCAGAAATATTTAGGATGGTTCAATATGGTGAGGGGAGATGCCAAAGGAGAGTCTTGGCTGGTATTGAGGAGAAAACAATAAATGAGGACCAAGCAATTTACCAAAAGTTCATACTAAGTTCAGTCAACCTTCATTTTTCTTTGAATTCTTGTCCCAATGTATTGCAGATTGCGAAGCAAATGAGTGGTTACAGATATGATGTCTCAGTCCCAATGGTGGACAAAGCTGTTGATTCTCCTTGGTCAAGAGCAAAAGATAAACTTGCAATTTCCAAAGATTGTTTAGCTGACAAGCCTAGTGATAGATTGAGCGGTCAAATAGTAGGAAGGTTCATGACATTAATAATGGGAATACTGACATTGATTAGGGTGACCAAGAGCATGCCTAGGAAGCTCACTGAAGCAGCACTTCACAGCAACTCAGCACATCACGACGGAGCCAAGACAAAAAAAGAGCACCGTCAGTTGGCGGCACCACCACCATCTTCCGGCGGAGACCACATGTTGCTGATGAAGCGGATGGCTGAGCTTGAAGACAAGGTTAATGCTCTCGCTTGCAAACCTCCCATGCCTCCAGAAAAGGAGGAAATGCTGAATACTGCGCTTGCCAGAGTCAGTGCTCTCGAGGATCAATTGAATGAGGCCAAAAAGGAGCTTGATAATGCACTTGCTCGACAAGGAGAGCTCCAAGCAGCCATTGATAAGAAGAAGAGGAAGAGGAGACTTGTACTTCCGCTGGTAAAGCTGAAGGAAACAAGCCTATGGTATTTGAAAATGAGTTGGCCATCTTCATCTCCATTCTTTTAA 1803 0.4343 MILDYHINFHLQLVVDPNNTGIENEHSEEERKKRVGPIKKVAINASNRFKSSFTKRGRRHSRVVSLSIEDDLDAEELQAVDAFRQMLVLEELLPAKHDDHHMMLRFLKARKFDFEKTKQMWADMLQWRKEFGADTIMEDFEFKELDEVMKYYPQGHHGVDKDGRPVYIEKLGQVDPNKLLQVTTMDRYVKYHVREFERTFVVKFPACSIAEKKHIDQSTTILDVQGVGLKNFNKAARDLIQRLQKIDGDNYPETLNRMFIINAGSGFRLLWNTVKSFLDPKTSAKIHVLGNKYQSKLLEIIEASELPEFLGGTCTCADKGGCMLSDKGPWNDPEIFRMVQYGEGRCQRRVLAGIEEKTINEDQAIYQKFILSSVNLHFSLNSCPNVLQIAKQMSGYRYDVSVPMVDKAVDSPWSRAKDKLAISKDCLADKPSDRLSGQIVGRFMTLIMGILTLIRVTKSMPRKLTEAALHSNSAHHDGAKTKKEHRQLAAPPPSSGGDHMLLMKRMAELEDKVNALACKPPMPPEKEEMLNTALARVSALEDQLNEAKKELDNALARQGELQAAIDKKKRKRRLVLPLVKLKETSLWYLKMSWPSSSPFF 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0126 600 MobiDBLite consensus disorder prediction 469 499 - -
Lele48g0126 600 SMART CRAL_TRIO_N_2 99 124 IPR011074 -
Lele48g0126 600 PRINTS Cellular retinaldehyde-binding protein signature 271 290 - -
Lele48g0126 600 PRINTS Cellular retinaldehyde-binding protein signature 102 124 - -
Lele48g0126 600 PRINTS Cellular retinaldehyde-binding protein signature 304 313 - -
Lele48g0126 600 Pfam CRAL/TRIO, N-terminal domain 91 123 IPR011074 -
Lele48g0126 600 Pfam CRAL/TRIO domain 150 312 IPR001251 -
Lele48g0126 600 Gene3D - 37 131 - -
Lele48g0126 600 Coils Coil 530 571 - -
Lele48g0126 600 SUPERFAMILY CRAL/TRIO domain 144 340 IPR036865 -
Lele48g0126 600 Gene3D - 132 342 IPR036865 -
Lele48g0126 600 SMART sec14_4 144 315 IPR001251 -
Lele48g0126 600 SUPERFAMILY CRAL/TRIO N-terminal domain 70 140 IPR036273 -
Lele48g0126 600 MobiDBLite consensus disorder prediction 469 487 - -
Lele48g0126 600 CDD SEC14 142 313 IPR001251 -
Lele48g0126 600 FunFam SEC14 cytosolic factor 132 344 - -
Lele48g0126 600 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 24 569 - -
Lele48g0126 600 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 144 318 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0126 Lele-ChrLele48 1616950 1620927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0126 78 309 Acyl Lipid Metabolism Gene Families AT5G47730 27.801 1.15e-19 89.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1287 45 22711534 22717178 Lele48g0126 48 1616950 1620927 hybridization
Lele46g1385 46 20731503 20735800 Lele48g0126 48 1616950 1620927 hybridization