Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1194 ATGGCTACAGAGGAAGAGAGCGCGGTAAAGGAGCCGTTGGATCTTATCAGGCTTAGCCTGGACGAGCGTATCTACGTCAAGCTTCGTTCGGACAGAGAACTTCGGGGCAAGCTTCACGCTTATGATCAGCATCTAAATATGATTCTTGGCGATGTGGAGGAAGTTGTTACTACTGTTGAAATTGATGATGAGACATATGAAGAGATTGTCAGGACTACCAAGCGGACAGTTCCTTTCCTGTTTGTAAGGGGAGATGGGGTGATATTGGTTTCCCCACCACTGAGGACTGCATGA 294 0.4762 MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTA 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1194 97 SMART Sm3 14 92 IPR001163 -
Lele47g1194 97 SUPERFAMILY Sm-like ribonucleoproteins 11 93 IPR010920 -
Lele47g1194 97 Pfam LSM domain 16 92 IPR001163 -
Lele47g1194 97 CDD LSm3 11 92 IPR034105 GO:0000398|GO:0003723
Lele47g1194 97 FunFam U6 snRNA-associated Sm-like protein LSm3 2 94 - -
Lele47g1194 97 Gene3D - 2 94 - -
Lele47g1194 97 PANTHER U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3 1 96 IPR040002 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1194 Lele-ChrLele47 17415717 17417870 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele47g1194 47 17415717 17417870 Lele47g1194 47 17415717 17417870 ECH
Lele45g0106 45 975134 977287 Lele47g1194 47 17415717 17417870 hybridization
Lele46g0132 46 749746 751860 Lele47g1194 47 17415717 17417870 hybridization