Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0121 ATGGATCACGCTCGGTCTAGAGTATACTATACGTATAGGTGTAGGCAAATGGGCAAGGGCTCAGATATTGGGCATATTCTGTGAATTGAGAATGAATATTCGGAGGAAGAAAGGAAGAAAAGGGTTGGGCCTATAAAGAAGGTGGCAATAAGTGCTTCAAATAGGTTCAAGAGTTCCTTCACAAAGAGAGGTCGCAGGCACAGTAGGGTTATGTCTCTGTCAATTGAGGATGACCTTGATGCAGAAGAGTTGCAGGCAGTCGATGCTTTTCGCCAAATGCTCGTTCTGGAAGAACTATTGCCTGCCAAGCACGACGATCATCATATGATGCTAAGATTCTTGAAAGCAAGGAAGTTTGACTTTGACAAAACAAAGCAAATGTGGGCAGACATGCTTCAATGGAGAAAAGAATTCGGTGCTGACACTATCATGGAGGATTTTGAGTTTAAGGAACTAGACGAAGTTATGAAATACTACCCACAAGGGCATCATGGAGTTGATAAGGATGGAAGACCTGTTTACATTGAAAAACTGGGCCAAGTTGATCCTAACAAGCTCTTACAAGTGACAACGATGGATTGCTACGTTAAGTACCACATAAGAGAGTTCGAGAGGACCTTCGTTGTCAAGTTCCCTGCCTGTTCAATTGCAGCAAAGAAACACATTGACCAAAGCACAACTATTTTGGACGTCCAAGGAGTGGGACTGAAAAATTTCAACAAAGCTGCAAGGGATCTGATTCAGAGGATTCAGAAGATTGATGGTGACAACTATCCTGAGACCTTGAACCGTATGTTCATCATCAATGCTGGCTCCGGATTTAGGCTCTTGTGGAACACTGTGAAGTCCTTCCTTGACCCCAAGACCTCTGCAAAAATCCATGTCCTAGGCAACAAATACCAGAGCAAGTTGCTTGAAATCATTGATGCCAGTGAACTTCCAGAGTTCTTGGGAGGTACTTGTACTTGTGCAGAGAAAGGCGGTTGCATGCTCTCAGACAAGGGACCATGGAATGACCCAGAAATCTTTAGGATGGTTCAAAATGGTGAGGGGAGATGCCAAAGGAGACTCTTGGATGGCATTGAGGAGAAAACAATAAATGAGGATGAAGCAATCTACCATAAGGGAGGTGATTCTTTCAAGAACATAAAATGTTTATCGCCGACGATGGAGCATGTCAAACCAGGAATTGCGAAGCAAATGAGTGGTTACAGATATGATGTCTCAGTCCCAATGGTGGACAAAGCTGTTGATTCACCTTGGTCAAAAGCAAAAGATAAACTTGCAATTTCCACAGGTTTACAATCTGATATTGGGATTGCTGAAGCTGCAGATTGTTTAGCTGTCAAGCCTAGTGATAGAATGAGCGGTCAAATAGTAGGAAGGTTCATGACATTAATAATGGGAATACTGACATTGATTAGGGTGACGAAGAGCATGCCTAGGAAGCTCACTGAAGCAGCACTTCACGGCAACTCGGCACAACACGACAGAGCCATGAAAAAAGGGCAGCGTCAGTTGCCGGCACCACCACCACCAGTTGTCGGCGGCGACCACATGTTGCTGATGAAGCGCATGGCTGAGCTTGAAGACAAGGTCAATGCTCTCGCTTGCAAACCTCCCATGCCTCCAGAAAAGGAGGAAATATTGAACACTGCTCTCGCCAGAGTAAGTGCCCTCGAGGATCAATTGAATGAAGCCAAAAAGGAGCTTGATAATGCACTTGCTCGACAAGGAGAGCTCCAAGCAGCCTTTGATAAGAAGAGGAGGAAAAGGAGACTTGTACTTCCGCTGGTAAAGCTGAAGGAAACACGCCTATGGTATTTGAAAATGAGTTGA 1839 0.4459 MDHARSRVYYTYRCRQMGKGSDIGHILXIENEYSEEERKKRVGPIKKVAISASNRFKSSFTKRGRRHSRVMSLSIEDDLDAEELQAVDAFRQMLVLEELLPAKHDDHHMMLRFLKARKFDFDKTKQMWADMLQWRKEFGADTIMEDFEFKELDEVMKYYPQGHHGVDKDGRPVYIEKLGQVDPNKLLQVTTMDCYVKYHIREFERTFVVKFPACSIAAKKHIDQSTTILDVQGVGLKNFNKAARDLIQRIQKIDGDNYPETLNRMFIINAGSGFRLLWNTVKSFLDPKTSAKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCAEKGGCMLSDKGPWNDPEIFRMVQNGEGRCQRRLLDGIEEKTINEDEAIYHKGGDSFKNIKCLSPTMEHVKPGIAKQMSGYRYDVSVPMVDKAVDSPWSKAKDKLAISTGLQSDIGIAEAADCLAVKPSDRMSGQIVGRFMTLIMGILTLIRVTKSMPRKLTEAALHGNSAQHDRAMKKGQRQLPAPPPPVVGGDHMLLMKRMAELEDKVNALACKPPMPPEKEEILNTALARVSALEDQLNEAKKELDNALARQGELQAAFDKKRRKRRLVLPLVKLKETRLWYLKMS 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0121 612 Pfam CRAL/TRIO domain 157 319 IPR001251 -
Lele47g0121 612 Pfam CRAL/TRIO, N-terminal domain 98 130 IPR011074 -
Lele47g0121 612 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 31 588 - -
Lele47g0121 612 SMART CRAL_TRIO_N_2 106 131 IPR011074 -
Lele47g0121 612 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 151 325 IPR001251 -
Lele47g0121 612 SUPERFAMILY CRAL/TRIO domain 151 347 IPR036865 -
Lele47g0121 612 PRINTS Cellular retinaldehyde-binding protein signature 311 320 - -
Lele47g0121 612 PRINTS Cellular retinaldehyde-binding protein signature 109 131 - -
Lele47g0121 612 PRINTS Cellular retinaldehyde-binding protein signature 278 297 - -
Lele47g0121 612 SMART sec14_4 151 322 IPR001251 -
Lele47g0121 612 FunFam SEC14 cytosolic factor 139 351 - -
Lele47g0121 612 CDD SEC14 149 320 IPR001251 -
Lele47g0121 612 Coils Coil 550 584 - -
Lele47g0121 612 Gene3D - 67 138 - -
Lele47g0121 612 SUPERFAMILY CRAL/TRIO N-terminal domain 77 147 IPR036273 -
Lele47g0121 612 MobiDBLite consensus disorder prediction 486 516 - -
Lele47g0121 612 Gene3D - 139 350 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0121 Lele-ChrLele47 895234 902502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0121 85 316 Acyl Lipid Metabolism Gene Families AT5G47730 29.046 1.65e-20 91.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1287 45 22711534 22717178 Lele47g0121 47 895234 902502 hybridization
Lele46g1385 46 20731503 20735800 Lele47g0121 47 895234 902502 hybridization