Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0540 ATGAGCGTGGTTGGTTTTGATTTTGGGAATGAGAGCTGCATTGTTGCTGTTGCAAGGCAGAGGGGGATTGATGTCGTACTCAATGATGAGTCCAAGCGTGAAACTCCTGCAGTTGTATGCTTCGGTGACAAACAAAGGTTTATTGGGACTGCTGGGGCTGCATCCACTATGATGAACCCCAAGAATGCTATCTCACAGATAAAGAGACTAATTGGCAGACAATTTTCTGACCCAGAATTGCAGCACGATCTGAAATCATTGCCTTATGCTGTCACTGAAGGGCCTGATGGATTTCCATTAATTCATGCCCGGTATTTGGGTGAAATTAGAACATTTACACCCACTCAAGTGCTGGGAATGGTGTTGTCAGATCTCAAGGAGATAGCGGAGAAGAATCTGAATGCAGCTGTTGTTGATTGTTGCATTGGAATTCCAGTTTATTTTACCGATCTTCAGAGAAGGGCAGTCTTGGATGCGGCAAAGATTGCTGGCCTGCATCCTCTTCGCTTGATTCATGAAACAACAGCAACTGCCTTGGCTTATGGAATATATAAAACAGATCTTCCTGAAAATGATCAGCTGAATGTTGCCTTTGTTGATATTGGACATGCTAGCATGCAAGTGTGCATTGCTGGCTTTAAAAAGGGTCAGCTGAAAGTATTGGCCCATTCATTTGATAGGTCTCTAGGTGGTAGAGATTTTGATGAGGTCTTGTTCAATCACTTTGCTGCAAAATTTAAGGAGGAGTACAAGATTGACGTTTTCCAGAATGCCAGGGCTTGTCTTAGGCTCAGGGCTGCATGTGAGAAGCTGAAGAAGGTTCTCAGTGCAAATCCTGAGGCACCCCTGAACATTGAATGCCTAATGGAGGAGAAGGACGTCAGGGGATTCATCAAACGTGATGACTTTGAGCAACTAAGTGTTCCAATTTTGGAGCGTGTGAAGGCACCTTTAGAGAAGGCCTTAGCAGAAGCAAACCTTACAGTTGAGAATATTCACATGGTCGAGGTGGTTGGCTCAGGTTCTCGTGTACCAGCTATAAACAAAATATTGACAGAATTTTTTAAAAAGGAGCCTAGGCGCACAATGAATGCAAGTGAGTGTGTTGCCAAGGGTTGTGCCTTGCAATGTGCAATTCTTAGTCCGACATTTAAAGTACGAGAGTTTCAGGTCAATGAAAGCTTTCCGTTTTCAATTTCACTTTCATGGAAAGGTTCTGGTCCAGATGCACAAGAAAGTGGCCCAGATAATCATCAAAGTACTGTTGTTTTTCCCAAAGGAAATGCCATACCTAGTGTCAAGGCCCTGACATTCTATAGGTCAGGAACTTTTTCTGTTGATGTACAGTATGATGATATGAGTGAGCTGCAAGGACCTGCAAAGATTAGCACATATACTATTGGTCCTTTCCAAACTACAGATAGTGAAAGGGCAAAAGTTAAAGTGAAAGTTCGTCTAAATTTGCATGGAATTGTACTTGTTGAGTCAGCTACTCTCTTGGAGGAGGAAATTGCTGAGGTACCAGTGTCAAAAGAACCAGCTGGAGAAAATGCTAAGATGGACACTGATGATGCTCCTACTGATGCTGCTGCTGCACCGCCACCAAGCTCTAATGATACTGATGTCAATATGCAAGATGCAAAGGCAACTGCCGATACCACTGGGGTTGAAAATGGCATTCCTGATACAGCAGACAAGCCTGTGCAGATGGATACAGACACCAAGGCTGAGGCTCCAAAGAAGAAGGTCAAGAAGACAAATATACCTTTCTCAGAGCAAGTTTATGGAGTCCTGGCCCCTGCAGATCTCCAGAAAGCTGTAGAGAAGGAGTTTGAAATGGCTTTACAAGATCGAGTGATGGAGGAAACAAAAGACAGGAAAAACGCAGTTGAGTCATATGTTTATGACATGAGAAACAAGCTTGCTGACAAATACCAAGATTTTGTCACTGCTCAAGAGAGGGAAGAGTTTACTGCCCAACTTCAGGAGGTAGAAGACTGGTTATATGAAGATGGTGAAGATGAAACTAAAGGTGTATACGTTGCCAAGCTTGAGGAACTCAAGAAGCGAGGTGATCCAATTGAGGAGCGTTACAAGGAATTTATGGAGAGGGGTATGATAATCGATCAGTTCATCTATTGCATAAATAGTTACAGAGAAGCTGCCATGTCAAATGATCCCAAATTTGATCATATCGACATCTCCGAGAAGCAGAACGTATTGAGTCAATGTGTGGAAGCTGAGGCCTGGCTCAGGGAGAAGAAGCAGCAGCAGGATTCACTTCCAAAACATGCTTCTCCTGTACTCCTATCAGCTGACATAAGAAAGAAAGCTGAGGCAGTTGATAGATTCTGTAAGCCGATCATGACGAAACCAAGGCCGGCCAAGCCAGCTAGTCCTGAAGCAACTGCGACTCCACCTCCTCAGGGCGGTGAACGATCATCACAACAAACTGAGGGGGATGCAAACACCAGTGCTAACGTGGGCGCCAATGAAAATGCTGGGGACGGTGCTGCTGGTCAGGCACCACCACAACCGGGGACTGAACCGATGGAGACTGACAAGTCAGAGAATACAAGCTCTGCATAA 2589 0.445 MSVVGFDFGNESCIVAVARQRGIDVVLNDESKRETPAVVCFGDKQRFIGTAGAASTMMNPKNAISQIKRLIGRQFSDPELQHDLKSLPYAVTEGPDGFPLIHARYLGEIRTFTPTQVLGMVLSDLKEIAEKNLNAAVVDCCIGIPVYFTDLQRRAVLDAAKIAGLHPLRLIHETTATALAYGIYKTDLPENDQLNVAFVDIGHASMQVCIAGFKKGQLKVLAHSFDRSLGGRDFDEVLFNHFAAKFKEEYKIDVFQNARACLRLRAACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDDFEQLSVPILERVKAPLEKALAEANLTVENIHMVEVVGSGSRVPAINKILTEFFKKEPRRTMNASECVAKGCALQCAILSPTFKVREFQVNESFPFSISLSWKGSGPDAQESGPDNHQSTVVFPKGNAIPSVKALTFYRSGTFSVDVQYDDMSELQGPAKISTYTIGPFQTTDSERAKVKVKVRLNLHGIVLVESATLLEEEIAEVPVSKEPAGENAKMDTDDAPTDAAAAPPPSSNDTDVNMQDAKATADTTGVENGIPDTADKPVQMDTDTKAEAPKKKVKKTNIPFSEQVYGVLAPADLQKAVEKEFEMALQDRVMEETKDRKNAVESYVYDMRNKLADKYQDFVTAQEREEFTAQLQEVEDWLYEDGEDETKGVYVAKLEELKKRGDPIEERYKEFMERGMIIDQFIYCINSYREAAMSNDPKFDHIDISEKQNVLSQCVEAEAWLREKKQQQDSLPKHASPVLLSADIRKKAEAVDRFCKPIMTKPRPAKPASPEATATPPPQGGERSSQQTEGDANTSANVGANENAGDGAAGQAPPQPGTEPMETDKSENTSSA 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0540 862 CDD HSPA4_like_NDB 2 381 - -
Lele43g0540 862 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 596 IPR029047 -
Lele43g0540 862 FunFam Heat shock 70 kDa protein 4 38 113 - -
Lele43g0540 862 ProSiteProfiles Ig-like domain profile. 345 463 IPR007110 -
Lele43g0540 862 MobiDBLite consensus disorder prediction 808 831 - -
Lele43g0540 862 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Lele43g0540 862 MobiDBLite consensus disorder prediction 788 862 - -
Lele43g0540 862 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 599 698 IPR029048 -
Lele43g0540 862 Gene3D Actin; Chain A, domain 4 230 313 - -
Lele43g0540 862 Gene3D - 38 113 - -
Lele43g0540 862 FunFam Heat shock 70 kDa protein 4 598 708 - -
Lele43g0540 862 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 720 796 IPR029048 -
Lele43g0540 862 FunFam Heat shock 70 kDa protein 4 230 313 - -
Lele43g0540 862 Gene3D - 186 360 - -
Lele43g0540 862 FunFam Heat shock 70 kDa protein 14 387 596 - -
Lele43g0540 862 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Lele43g0540 862 FunFam Heat shock 70 kDa protein 4 111 206 - -
Lele43g0540 862 Gene3D - 599 706 IPR029048 -
Lele43g0540 862 PRINTS 70kDa heat shock protein signature 140 160 - -
Lele43g0540 862 PRINTS 70kDa heat shock protein signature 332 348 - -
Lele43g0540 862 PRINTS 70kDa heat shock protein signature 2 15 - -
Lele43g0540 862 PRINTS 70kDa heat shock protein signature 30 42 - -
Lele43g0540 862 PRINTS 70kDa heat shock protein signature 363 383 - -
Lele43g0540 862 Pfam Hsp70 protein 3 699 IPR013126 GO:0005524|GO:0140662
Lele43g0540 862 MobiDBLite consensus disorder prediction 533 552 - -
Lele43g0540 862 FunFam Heat shock 70 kDa protein 4 1 76 - -
Lele43g0540 862 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 631 IPR029047 -
Lele43g0540 862 Gene3D - 5 374 - -
Lele43g0540 862 MobiDBLite consensus disorder prediction 508 568 - -
Lele43g0540 862 PANTHER HSC70CB, ISOFORM G-RELATED 1 830 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0540 Lele-ChrLele43 4884233 4888291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0540 4 438 Calmodulin-binding Proteins AT1G16030 36.073 1.93e-87 290
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0852 41 18207492 18211294 Lele43g0540 43 4884233 4888291 hybridization
Lele42g0843 42 21305748 21309580 Lele43g0540 43 4884233 4888291 hybridization