Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0891 ATGATCTCCTCTAATAGCTGCAGCTTCCTGAGCAACACAGGAGTAGGTGGGTCTTGCAGTAACTTCTCTGATGCGCAGAGAAGATGTTCTGGTCCTCTGAGGATAGTATTTATGGCTCAAAGCAGCCGGTCCAATGATGCCAGCGTGGCGCTGGAGACCAAGTTAAATGGAATTAAAGACGATTCTGTGGTGGTCGACGTGAACGGTAAACCCACCGTTGGCGGCGGCGTTCAGGACACGTATGGCGAAGATAGAGCTACGGAGGACCAGTTTGTTACGCCGTGGAGTGTCTCCGTTGCTAGTGGATATACTTTGTTACGAGATCCACACCACAACAAAGGGCTTGCCTTCACTGAGAAAGAGAGGGATGCCCACTACTTGCGTGGTCTACTTCCTCCAACAACTATTTCTCAAGATACTCAGGTGAAGAAAATGATCCGACATATACGCCAGTATCAGGTTCCTTTGCAGAAGTACATGGCAATGATGGATCTTCAGGAGCGAAACGAAAGGCTGTTTTACAAACTTCTTATTGACCATGTTGAGGAGCTACTTCCAGTTGTCTATACTCCAACTGTAGGAGAAGCTTGCCAGAAGTATGGTAGCATCTTCATGCGTCCACAAGGTCTTTATATCAGTCTGAAAGAAAAGGGGAGGATTCTTGAAGTTCTAAGGAATTGGCCTCAGAGGGACATTCAAGTCATCGTTGTAACTGATGGAGAGCGGATCTTGGGTCTCGGAGATCTTGGTTGTCAGGGAATGGGAATACCAGTGGGGAAACTTTCTTTGTATACGGCACTTGGAGGAGTCCGTCCTTCCGCTTGCCTGCCTATTACCATTGATGTGGGTACAAACAATGAGACCTTGTTAAATGATGAATTATATATTGGGCTGAAGCAACGACGAGCAACTGGACAGGAATATGCTGAACTTATTGATGAATTTATGACAGCTGTCAAGCAAAATTATGGTGAAAAGGTCCTCATTCAGTTTGAAGACTTTGCAAACCACAATGCATTTGATCTACTGGAGAAATATAGTTCAACACATCTCGTATTTAACGACGATATTCAGGGGACAGCATCAGTGGTCCTTGCTGGATTAGTTGCTTCTCTGAAAGTAGTTGGAGGAAATTTAGCTGACCACAGATTCTTATTCCTTGGTGCGGGAGAGGCTGGCACTGGAATAGCAGAACTCATAGCACTTGAAATTTCTAAACAGACAAATGCCCCACTTGAGGAAATGCGCAAGAACATTTGGTTGGTTGATTCAAAGGGATTGATTGTGAGTTCAAGAAAAGAATCGCTCCAACATTTTAAGAAGCCATGGGCTCATGACCATGAACCTATTAATAATCTATTAGATGCTGTGAATAAAATTAAGCCGACAGTGTTGATTGGAACATCTGGGCAAGGGAAAACCTTCACGAAAGAGGTTGTTGAAGCAATGGCCACCAATAATGAGAGACCCATTATATTTGCTCTTTCCAATCCAACATCTCAGTCAGAATGTACTGCTGAAGAAGCATATAAATGGAGCAAGGGGCGTGCTGTTTTTGCCAGTGGGAGCCCATTTCCTCCTGTTGAGTATGAGGGGAAAGTGTTTGTGCCTGGCCAGGCCAACAATGCTTACATCTTTCCTGGATTTGGTCTGGGCTTAATAATTTCGGGAACAATCCGAGTACACGAAGACCTGCTTCTGGCAGCCTCGGAAGCTTTAGCTGCCCAAGTGAGCCAAGAGAACTTTGACAAGGGGCTCATATTCCCACCCTTCACTAACATCAGAAAGATCTCAGCACACATAGCTGCTAATGTTGCGGCCAAGGCTTATGAGCTCGGCCTGGCTACCCGCCTTCCTCAACCGAAAGATTTGGTGAAGTATGCTGAGAGCTGTATGTATTCACCCCTATATCGTGACTACCGGTAA 1926 0.4543 MISSNSCSFLSNTGVGGSCSNFSDAQRRCSGPLRIVFMAQSSRSNDASVALETKLNGIKDDSVVVDVNGKPTVGGGVQDTYGEDRATEDQFVTPWSVSVASGYTLLRDPHHNKGLAFTEKERDAHYLRGLLPPTTISQDTQVKKMIRHIRQYQVPLQKYMAMMDLQERNERLFYKLLIDHVEELLPVVYTPTVGEACQKYGSIFMRPQGLYISLKEKGRILEVLRNWPQRDIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNETLLNDELYIGLKQRRATGQEYAELIDEFMTAVKQNYGEKVLIQFEDFANHNAFDLLEKYSSTHLVFNDDIQGTASVVLAGLVASLKVVGGNLADHRFLFLGAGEAGTGIAELIALEISKQTNAPLEEMRKNIWLVDSKGLIVSSRKESLQHFKKPWAHDHEPINNLLDAVNKIKPTVLIGTSGQGKTFTKEVVEAMATNNERPIIFALSNPTSQSECTAEEAYKWSKGRAVFASGSPFPPVEYEGKVFVPGQANNAYIFPGFGLGLIISGTIRVHEDLLLAASEALAAQVSQENFDKGLIFPPFTNIRKISAHIAANVAAKAYELGLATRLPQPKDLVKYAESCMYSPLYRDYR 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0891 641 ProSitePatterns Malic enzymes signature. 353 369 IPR015884 GO:0004471
Lele42g0891 641 SMART malic_2 166 347 IPR012301 GO:0004471
Lele42g0891 641 CDD NAD_bind_1_malic_enz 357 635 - -
Lele42g0891 641 SMART Malic_M_2 357 610 IPR012302 GO:0051287
Lele42g0891 641 FunFam Malic enzyme 100 354 - -
Lele42g0891 641 PIRSF ME 72 641 IPR001891 GO:0004470|GO:0004471
Lele42g0891 641 Pfam Malic enzyme, N-terminal domain 166 346 IPR012301 GO:0004471
Lele42g0891 641 Gene3D - 355 641 - -
Lele42g0891 641 Gene3D - 100 354 IPR037062 GO:0004471
Lele42g0891 641 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 80 356 IPR046346 -
Lele42g0891 641 PANTHER MALIC ENZYME-RELATED 72 640 - -
Lele42g0891 641 Pfam Malic enzyme, NAD binding domain 357 609 IPR012302 GO:0051287
Lele42g0891 641 PRINTS Malic enzyme signature 384 400 IPR001891 GO:0004470|GO:0004471
Lele42g0891 641 PRINTS Malic enzyme signature 232 261 IPR001891 GO:0004470|GO:0004471
Lele42g0891 641 PRINTS Malic enzyme signature 353 369 IPR001891 GO:0004470|GO:0004471
Lele42g0891 641 PRINTS Malic enzyme signature 487 503 IPR001891 GO:0004470|GO:0004471
Lele42g0891 641 PRINTS Malic enzyme signature 172 196 IPR001891 GO:0004470|GO:0004471
Lele42g0891 641 PRINTS Malic enzyme signature 268 290 IPR001891 GO:0004470|GO:0004471
Lele42g0891 641 PRINTS Malic enzyme signature 328 346 IPR001891 GO:0004470|GO:0004471
Lele42g0891 641 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 357 640 IPR036291 -
Lele42g0891 641 FunFam Malic enzyme 355 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0891 Lele-ChrLele42 21676677 21681538 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0349 37 2898878 2903266 Lele42g0891 42 21676677 21681538 CCT
Lele42g0891 42 21676677 21681538 Lele43g0497 43 4511430 4516455 hybridization
Lele42g0891 42 21676677 21681538 Lele44g0465 44 3521642 3526518 hybridization