Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0334 ATGGGCGAATTAGGTAACTACTGCATTAAACTTCATGTTTTACTTCTCTTCCATGGTTTTTGGGTACTAGGTGGTGCATTTGGTGGCAACAGGGGACTCCGTCCAGTACCTCCTGAGAAAGGAATATTTCCTTTGGACCACATGCATTTATGTGACGTGGAGAAGAAGGAATATCTCAGTTGTCTAAAATCATTTGGTCACAAGTCTGAAAAATGCAAGGAATTCTCAAAGAAATATCTGGAATGTCGGATGGAAAAGAACTTGATGGCAAAGCAAGACTTGTCAGAGCTTGGTTTCAAGGAAAGTGATGTGGAAACTCCCGGAGGGAAAATTGCTGAGAGTTGA 345 0.4174 MGELGNYCIKLHVLLLFHGFWVLGGAFGGNRGLRPVPPEKGIFPLDHMHLCDVEKKEYLSCLKSFGHKSEKCKEFSKKYLECRMEKNLMAKQDLSELGFKESDVETPGGKIAES 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0334 114 Pfam CHCH domain 51 85 IPR010625 -
Lele40g0334 114 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 48 90 - -
Lele40g0334 114 PANTHER CYTOCHROME C OXIDASE 19-1 24 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0334 Lele-ChrLele40 2757550 2759139 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0334 40 2757550 2759139 Lele40g0334 40 2757550 2759139 ECH
Lele37g0377 37 3168915 3170618 Lele40g0334 40 2757550 2759139 hybridization
Lele38g0356 38 2907913 2909498 Lele40g0334 40 2757550 2759139 hybridization