Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0190 ATGAAAGTGCATCTTCTCGCTTCTATCGGTGATAGTAATTGGGTGAGGATGAGCAGCATTGCGGGTTCGTTCAATGGAGAATGGAACAGTCTGTTCAATCTCCCTGAAACAATAGAAAAATTCATGTTTCAACCTCGACCTCGCGACTCTCAAGAAACCAGAGGCGTATCTAACATCCCAGTGGACATTATTGAAACTCCCAAAGAATACGTATTTTTCATGGACATCCCTGGCCTCTCCAAAATCGACATTCAGGTGACTGTGGAGGATGAGAACACGCTGGTGGTTCGAAGCAATGGGAAGAGGAAACGAGAAGAAGGGGACGAAGAAGGGTGCAAGTACCTGAGGCTGGAGAGGAGAGCGCCTCAGAAGCTGCTGAGGAGGTTCCGATTGCCGGAGAATGCCAACGTGGTAGCCATCAATGCAAAATGTGAGAATGGTGTTCTCACTGTGACTGTTGAGAAGCACCCTCCACCTCCGAAATCCAAAACAGTTCAAGTGGCGATTGCCTGA 513 0.4815 MKVHLLASIGDSNWVRMSSIAGSFNGEWNSLFNLPETIEKFMFQPRPRDSQETRGVSNIPVDIIETPKEYVFFMDIPGLSKIDIQVTVEDENTLVVRSNGKRKREEGDEEGCKYLRLERRAPQKLLRRFRLPENANVVAINAKCENGVLTVTVEKHPPPPKSKTVQVAIA 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0190 170 Pfam Hsp20/alpha crystallin family 62 167 IPR002068 -
Lele40g0190 170 FunFam 17.4 kDa class III heat shock protein isoform A 23 168 - -
Lele40g0190 170 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 52 170 IPR002068 -
Lele40g0190 170 SUPERFAMILY HSP20-like chaperones 31 162 IPR008978 -
Lele40g0190 170 Gene3D - 13 169 IPR008978 -
Lele40g0190 170 Coils Coil 169 170 - -
Lele40g0190 170 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 28 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0190 Lele-ChrLele40 1492450 1494245 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0190 40 1492450 1494245 Lele40g0190 40 1492450 1494245 ECH
Lele37g0201 37 1601471 1603565 Lele40g0190 40 1492450 1494245 hybridization
Lele38g0202 38 1597773 1599114 Lele40g0190 40 1492450 1494245 hybridization