Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1222 ATGTTTATTAATCGCTCCTTGTTTTTTCTTCACAATGTTGACTGGAAAATCTTCACCTCATTCTCTGCTTATTGTCTTGAATTACTACATTTTCAGGAACGACCTCAAAGTAATTGGCTGAGGATGAGCCGCATTGCGGATTCGTTCAACGGAGTTTTGAATGGTATGTTCAATCTTCCTGAAACCATTGAAAAATTCATGTTTCAACCTCGACATCACGACTCTCAAGAAATCAGAGGGGTCTCTAACATCCCAGTGGACATTATGGAAACTCCCAAAGAATACGTATTTTTCATGGACGTCCCTGGTCTCTCCAAAACCGACATTCAGGTGACTGTGGAAGATGAGAACACACTAGTGGTTCGAAGCAATGGGAAGAGGAAACGCGAAGAAGGGGAAGAAGAAGGGTGCAAGTACCTGAGGCTGGAGAGGAGAGCGCCTCAGAAGCTGCTGAGGAAGTTTCAATTGCCGGAGAATGCCAACGTGGCAGCCATCAATGCAAAATGTGAGAATGGTGTTCTCACCGTGACTGTTGAGAAACACCCTCCACCTCCAAAATCCAAAACAGTTCAAGTTGCCGTTGCTTGA 588 0.4456 MFINRSLFFLHNVDWKIFTSFSAYCLELLHFQERPQSNWLRMSRIADSFNGVLNGMFNLPETIEKFMFQPRHHDSQEIRGVSNIPVDIMETPKEYVFFMDVPGLSKTDIQVTVEDENTLVVRSNGKRKREEGEEEGCKYLRLERRAPQKLLRKFQLPENANVAAINAKCENGVLTVTVEKHPPPPKSKTVQVAVA 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1222 195 Pfam Hsp20/alpha crystallin family 87 192 IPR002068 -
Lele39g1222 195 CDD ACD_sHsps-like 87 180 - -
Lele39g1222 195 Gene3D - 38 194 IPR008978 -
Lele39g1222 195 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 53 192 - -
Lele39g1222 195 FunFam 17.4 kDa class III heat shock protein isoform A 46 193 - -
Lele39g1222 195 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 77 195 IPR002068 -
Lele39g1222 195 SUPERFAMILY HSP20-like chaperones 57 187 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1222 Lele-ChrLele39 20871804 20873661 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1222 39 20871804 20873661 Lele39g1222 39 20871804 20873661 ECH
Lele37g0201 37 1601471 1603565 Lele39g1222 39 20871804 20873661 hybridization
Lele38g0202 38 1597773 1599114 Lele39g1222 39 20871804 20873661 hybridization