Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1109 ATGGAGGCAAGCGAGAATTGTTGTTCAACTCAGCTTATTGATGGAGACGGTACATTCAATGTTGCTGGAATTGAACAATTTATGAAGGAGGTTAAATTGGGTGAATTTGGACTTTCATATGCTGTAGTTTCTATAATGGGTCCACAAAGTAGTGGTAAGAGCACTCTATTAAATCATTTGTTCAGAACTAACTTCAGGGAGATGGATGCTTTCAGGGGAAGGTCCCAAACCACTAAAGGAATTTGGATGGCTAGATGTGCTGGCTTGGAGCCTTGTACAATAGTGATGGATTTGGAGGGCACAGATGGAAGAGAACGTGGAGAGGATGATACTGCTTTCGAGAAGCAGAGTGCTTTATTTGCTCTTGCTGTTTCAGATATAGTGTTGATAAACATGTGGTGTCATGACATTGGGCGTGAGCAAGCTGCAAATAAACCTCTTTTGAAAACTGTCTTTCAGGTCATGATGAGATTGTTTAGTCCACGCAAAACGACATTGATGTTTGTCATTCGTGATAAAACAAGGACACCCCTTGAGAATTTAGAGCCTGTTTTACGAGAGGATATTCAGAAGATTTGGGACTCTGTTCCTAAGCCACAGGCTCACAAGGAAACCCAACTAAGTGAATTTTTCAATGTCGAAGTTGTTGCTCTTTCTAGTTATGAAGAAAAGGAAGAGCAATTTAAGGAGCAGGTTGCTAGCTTGAGGCAACGATTCCAGCATTCTATTGCTCCTGGTGGACTTGCTGGGGATAGACGTGGAGTAGTTCCTGCTTCTGGATTTTCTTTCAGTGCACAGCAAATTTGGAGAGTCATTAAGGAGAACAAGGACCTTGACCTGCCTGCCCACAAGGTCATGGTTGCTACTGTACGCTGTGAAGAAATTGCCAATGAGAAATATGCTGCTTTTAGTGCAAATGAGGAATGGAGTCAGTTGGAGGAGGCTGTGCAATCTGGCCCAATTCCTGGATTTGGGAAAAGGCTCAATTCAATTCTTGATAGTTTTCTTTCAGAGTATGATATAGAAGTCACTTATTTTGATGAAGGTGTCAGATCTGCAAAACAAAAGCAGCTTCAAGAAAAACTGTTGCAACTTGTCCAACCAGCATTCCAATCTGCACTGGGACATGTAAGGTCTGGAACTTTTGATAAATTTAAAGAAGCATTTGACAAGGCTTTGACTGGAGGGGAAGGGTTTTCTGCTGCTGCTAAAAACTGCGTTGAGTCTTGTATGTCTCAGTTTGATGAAGCATGTGCAGAAGTTGTTGTTGAAAAAGCAAACTGGGATACATCTAAAGTGAGGGAGAAACTGCGTCGTGACATTGATGGTCATGTTGCTTCTGTGCGCGAGGCTAAGCTGTCTGAATTGACATCATCATATCAGGAAAAATTGAAGGAGGCGTTAGCTGGACCTGTTGAAGCTCTTTTAGATGAAGCTAACAGTGATACTTGGCCAGCAATAAGAAAACTTCTTAGGCGTGAAACTGAATCAGCAGCTTCAGGTTTCTCTGCTGCAATTTCTGGGTATGATATGGAGGAAAAAACACGACAGAACATGATTACGAGTTTAGAGGACTACGCAAGGGGTGTGGTGGAAGCAAAGGCTAAGGAAGAAGCTGGAAGGGTTCTAATTCGTATGAAGGATAGGTTTACAACATTGTTCAGTCGTGATTCTGATTCAATGCCTCGTATTTGGACGGGGAAGGAAGACATTCGAGCCATTACTAAGACCTCCCGCTCTGCTTCCTTAAAGTTGCTATCTGTTATGGCTGCAACCCGTTTGGATGATCAAGATGTTGATAATATTGAGAAAACATTAGCAGTTGCTCTGGACGATTCATCAGGAACTGCTACTAAGGATAGAAGCATCACGGTGGTTGATCCACTGGCTTCAAGCTCTTGGGAACAGGTTCCTTCCTCAAAAACATTGATCACACCTGTACAGTGCAAATCATTATGGAGGCAATTTAAGATGGAGACAGAGTATCATGTCTCTCAGGCCATATCTGCACAGGAGGCCAACAAGCGTAATAATAACTGGTTACCTCCTCCATGGGCAATTGTTGCTTTGGTTGTTCTTGGATTTAATGAATTTATGACCCTTCTAAGAAATCCATTGTATTTGGGCGTTATCTTTGTTGGTTTTCTTCTTGTAAAAGCCCTATGGGTGCAGATGGACATTTCTAATGAATTCAGCAATGGAATGCTTCCGGGACTCATATCCTTGTCGACGAGATTTCTTCCAACTGTCATGAACATTATCAGAAAACTAGCAGAGGAGGCACAGAACCCTGCACCTGACAACGCACAGAGAAACCCATCAGGAAGCAATCACAATGCTGTTACAGCTGGAAGCAATATGTCATCTAGCGCTTCTTCTAACGCAAATTTGTCCGAAAAAGCTTCGTCTAACGTAACTTCATTGGAAAATGGTGCTGAATACTCTAGTTCATCAAAATATGAGTAG 2466 0.4225 MEASENCCSTQLIDGDGTFNVAGIEQFMKEVKLGEFGLSYAVVSIMGPQSSGKSTLLNHLFRTNFREMDAFRGRSQTTKGIWMARCAGLEPCTIVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKETQLSEFFNVEVVALSSYEEKEEQFKEQVASLRQRFQHSIAPGGLAGDRRGVVPASGFSFSAQQIWRVIKENKDLDLPAHKVMVATVRCEEIANEKYAAFSANEEWSQLEEAVQSGPIPGFGKRLNSILDSFLSEYDIEVTYFDEGVRSAKQKQLQEKLLQLVQPAFQSALGHVRSGTFDKFKEAFDKALTGGEGFSAAAKNCVESCMSQFDEACAEVVVEKANWDTSKVREKLRRDIDGHVASVREAKLSELTSSYQEKLKEALAGPVEALLDEANSDTWPAIRKLLRRETESAASGFSAAISGYDMEEKTRQNMITSLEDYARGVVEAKAKEEAGRVLIRMKDRFTTLFSRDSDSMPRIWTGKEDIRAITKTSRSASLKLLSVMAATRLDDQDVDNIEKTLAVALDDSSGTATKDRSITVVDPLASSSWEQVPSSKTLITPVQCKSLWRQFKMETEYHVSQAISAQEANKRNNNWLPPPWAIVALVVLGFNEFMTLLRNPLYLGVIFVGFLLVKALWVQMDISNEFSNGMLPGLISLSTRFLPTVMNIIRKLAEEAQNPAPDNAQRNPSGSNHNAVTAGSNMSSSASSNANLSEKASSNVTSLENGAEYSSSSKYE 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1109 821 FunFam Protein ROOT HAIR DEFECTIVE 3 homolog 18 273 - -
Lele39g1109 821 Gene3D - 14 245 IPR027417 -
Lele39g1109 821 PANTHER PROTEIN SEY1 5 794 IPR008803 -
Lele39g1109 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 249 IPR027417 -
Lele39g1109 821 Hamap Protein SEY1 [SEY1]. 9 762 IPR008803 -
Lele39g1109 821 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Lele39g1109 821 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Lele39g1109 821 MobiDBLite consensus disorder prediction 762 821 - -
Lele39g1109 821 MobiDBLite consensus disorder prediction 765 821 - -
Lele39g1109 821 Pfam Sey1 three-helix bundle domain 323 760 IPR046758 -
Lele39g1109 821 CDD GBP 37 242 - -
Lele39g1109 821 Coils Coil 218 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1109 Lele-ChrLele39 19642673 19651279 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0314 37 2622919 2634034 Lele39g1109 39 19642673 19651279 hybridization
Lele38g0298 38 2341897 2351785 Lele39g1109 39 19642673 19651279 hybridization