Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1029 ATGAATTATGATGTAAGATATTGGATGGTTGAGGTTGTAATCCCAGGTCAAAGCCCATCACTCCACGCCACACACACGGACCTGGTGAAATCCTCGAAGCCTCGCTTCGTCCTTGACAGGGGATACCACAATCTCGGAGCCGCATTCTCTCCGTTCCCTAACCCTATTTCCTCTGACATGGAATCCATCGGTGTCCTCATGCTCTGCCCAATGTTCTCCTACTTGGAGCAAGAGCTCGATAAGCGCTACAAGCTCTACCGCTACTGGAATTACCCACAAAGCGTCCAGTTCCTCAAGGAACACGCCAATTCTATCCGCGCCGTCGTCGGTAGCTCCAACTACGGCCCCGACGCTGCGCTCATCGAAGCCTTACCCAAACTGGAGATCGTGTCTAGCTTCAGCGTTGGAGTGGATAAGATTGACTTGAACAAGTGTAGGGAAAAGGGTATTCGGGTTACAAATACACCTGATGTGTTGACCGATGAAGTCGCCGACTTGACGATCGGCTTGATTCTGGCCGTGTTGAGGAGGCTCTGTGAGTGTGATCGGTATGTGAGGAGCGGGAAATGGAAGAGGGGTGACTACAGGTTGACTACTAAGTTCTCCGGGAAAACAGTGGGCATTATTGGTTTGGGAAGGATTGGCCAGGCTGTAGCCAAGAGAGCTGAAGGATTCAACTGTAAAATAAGCTACTACTCTAGAACAGAGAAACCAGACTCAAATTACAAGTACTATCCAACCGTTGTAGAGTTAGCATCCAACTGTGATATTCTGGTTGTTGCATGTCCTCTTACAGAGGAAACCCACCATATCATCAACCGCGAGGTGCTTAACGCCCTCGGTCCCAAGGGTGTTCTTATTAACATCGGTCGAGGTAAGCACGTGGATGAACAAGAACTGGTCCCTGCACTTCTTGAAGGCAGAGTGGGTGGTGCTGGACTAGATGTGTTTGAAGATGAACCTAATGTACCAGAAGAGTTGTTTGGGCTAGAAAACGTTGTGTTATTGCCTCATATTGGAAGCGCCACTGTTGAAACTCGCACCGCCATGGCTGACCTTGTCCTTGGAAATCTTGAGGCTTACTTCCAGAACAAGCCACTGTTAACTCCATTGGTTTAA 1119 0.4897 MNYDVRYWMVEVVIPGQSPSLHATHTDLVKSSKPRFVLDRGYHNLGAAFSPFPNPISSDMESIGVLMLCPMFSYLEQELDKRYKLYRYWNYPQSVQFLKEHANSIRAVVGSSNYGPDAALIEALPKLEIVSSFSVGVDKIDLNKCREKGIRVTNTPDVLTDEVADLTIGLILAVLRRLCECDRYVRSGKWKRGDYRLTTKFSGKTVGIIGLGRIGQAVAKRAEGFNCKISYYSRTEKPDSNYKYYPTVVELASNCDILVVACPLTEETHHIINREVLNALGPKGVLINIGRGKHVDEQELVPALLEGRVGGAGLDVFEDEPNVPEELFGLENVVLLPHIGSATVETRTAMADLVLGNLEAYFQNKPLLTPLV 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1029 372 Gene3D - 160 343 - -
Lele39g1029 372 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 63 367 - -
Lele39g1029 372 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 160 341 IPR036291 -
Lele39g1029 372 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 168 340 IPR006140 GO:0051287
Lele39g1029 372 Gene3D - 76 366 - -
Lele39g1029 372 CDD HPPR 63 362 - -
Lele39g1029 372 FunFam Putative 2-hydroxyacid dehydrogenase 160 343 - -
Lele39g1029 372 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 206 233 IPR029752 -
Lele39g1029 372 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 65 195 - -
Lele39g1029 372 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 77 369 IPR006139 GO:0016616|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1029 Lele-ChrLele39 18958462 18963425 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0399 37 3344276 3346732 Lele39g1029 39 18958462 18963425 hybridization
Lele38g0378 38 3077789 3080403 Lele39g1029 39 18958462 18963425 hybridization