Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0909 ATGTCGAAAGAAGAAGCTTTCATTGGGTCGATTGACCAGGGAACCACAAGCACAAGATTCATCATCTACGATCGCTCTGCTCGACCCATCGCATCTCACCAGGTCGAGTTCACTCAGCACTATCCAGAAGCAGGATGGGTGGAGCATGATCCGATGGAGATTTTGGAGAGCGTTCGGGTGTGTATCACCGGAGCTCTCGATAAAGTCAAGTCCGATGGAACCGACGTCGTTAAGGGATTGAAGGCAATCGGTGTGACCAATCAGAGGGAGACTACTCTACTTTGGAGCAAATCCACTGGGATTCCACTGTATAACGCTATCGTTTGGATGGATGCTCGTACCAGTTCTGTTTGCAGGAAATTGGAGAATGAATTATCAGGTGGTAGAACTCACTTTGTGGAGACCTGTGGTCTGCCTATAAGCACTTACTTCAGTGCAACTAAACTGTTATGGCTGATGGAAAATGTGGAAGCGGTGAAGGAGGCCATTAAGAAAGGAGATGCTCTCTTTGGAACTATAGACACTTGGTTGATATGGAATTTAACTGGCGGCGTGAAAGGCGGATTGCATGTCACTGATGTTTCGAATGCATCACGGACAATGCTGATGAATCTTAAAACTCTTGACTGGGATGCATCCACATTGAAAAGCCTCGGAATTCCAGCTGAAATTCTGCCGAAGATTGTAAGTAATTCCGAAGTCATTGGAAAGATTACTCCGGGATGGCCAATTGCCGATACCCCAATTGCTGGGTGTTTAGGTGATCAACATGCTGCAATGGTAGGACAAGCCTGTCGAAAAGGAGAGGCTAAAAGCACATATGGCACCGGTGCTTTCATACTCCTAAATACCGGTGAAGAGATAGTTACATCAACACATGGTCTTCTGACCACTTTAGCCTTTAAGCTTGGTCCTAATTCCCCAGCAAATTACGCGCTGGAAGGATCAATTGCGATTGCTGGAGCTGCAGTGCAGTGGCTGAGAGATAGCCTTGGTATTATTAGTAGTGCTAAGGAGATAGAGGATTTGGCTTCACAGGTTGAGTCCACAGGTGGAGTTTATTTTGTTCCTGCTTTTAATGGGTTGTTTGCGCCGTGGTGGCGAGACGATGCTCGCGGGGTTTGTATTGGGATTACAAGGTTTACGAGCAAGGCTCACATTGCTAGAGCCGTGCTTGAGAGCATGTCTTTTCAAGTGAAAGATGTCTTGGATTCAATGAAGAAAGATTCTGAGGAAACTGATAAAGATAAGAAAGAAAAAGAGGAATTCTTGCTCAGAGTGGATGGTGGTGCAACTGTTAACAACCTTTTGATGCAGATTCAGGCGGACTTGTTGGGAAGTCCGGTGATTAGACCGGCCGACATAGAGACAACAGCGCTTGGTGCGGCCTATGCAGCCGGGTTAGCTGTTGGAGTTTGGACAGAAGAGGAGATATTTGCTTCTGGTGAGAAGGTAAAGACTTCAACTGTATTCCGTCCAGTATTAGATGAGCAACTGAGGAAGAAGAAAGTGGAATCTTGGTGCAAAGCAGTAACCAGAACATTTGACTTGGCGGATCTTTCTCTGTGA 1569 0.4621 MSKEEAFIGSIDQGTTSTRFIIYDRSARPIASHQVEFTQHYPEAGWVEHDPMEILESVRVCITGALDKVKSDGTDVVKGLKAIGVTNQRETTLLWSKSTGIPLYNAIVWMDARTSSVCRKLENELSGGRTHFVETCGLPISTYFSATKLLWLMENVEAVKEAIKKGDALFGTIDTWLIWNLTGGVKGGLHVTDVSNASRTMLMNLKTLDWDASTLKSLGIPAEILPKIVSNSEVIGKITPGWPIADTPIAGCLGDQHAAMVGQACRKGEAKSTYGTGAFILLNTGEEIVTSTHGLLTTLAFKLGPNSPANYALEGSIAIAGAAVQWLRDSLGIISSAKEIEDLASQVESTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMSFQVKDVLDSMKKDSEETDKDKKEKEEFLLRVDGGATVNNLLMQIQADLLGSPVIRPADIETTALGAAYAAGLAVGVWTEEEIFASGEKVKTSTVFRPVLDEQLRKKKVESWCKAVTRTFDLADLSL 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0909 522 Gene3D - 2 262 - -
Lele39g0909 522 ProSitePatterns FGGY family of carbohydrate kinases signature 1. 143 155 IPR018483 GO:0005975|GO:0016773
Lele39g0909 522 FunFam Glycerol kinase 5 263 - -
Lele39g0909 522 SUPERFAMILY Actin-like ATPase domain 265 515 IPR043129 -
Lele39g0909 522 Gene3D - 264 516 - -
Lele39g0909 522 FunFam Glycerol kinase 264 517 - -
Lele39g0909 522 Pfam FGGY family of carbohydrate kinases, C-terminal domain 270 469 IPR018485 GO:0005975|GO:0016301
Lele39g0909 522 PIRSF GlpK 5 521 IPR000577 GO:0005975|GO:0016301
Lele39g0909 522 PANTHER SUGAR KINASE 7 516 - -
Lele39g0909 522 SUPERFAMILY Actin-like ATPase domain 8 265 IPR043129 -
Lele39g0909 522 TIGRFAM glycerol_kin: glycerol kinase 7 515 IPR005999 GO:0004370|GO:0006072
Lele39g0909 522 Pfam FGGY family of carbohydrate kinases, N-terminal domain 8 262 IPR018484 GO:0005975|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0909 Lele-ChrLele39 18049815 18052633 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g0909 39 18049815 18052633 Lele39g0909 39 18049815 18052633 ECH
Lele37g0518 37 4233226 4236097 Lele39g0909 39 18049815 18052633 hybridization
Lele38g0489 38 3933307 3935897 Lele39g0909 39 18049815 18052633 hybridization