Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0316 ATGTTGCTTCCAGCCACAGGAGTAGGGATGAATTCTGCAATGGATGATATGAATTTGATTCAGCAAGCTCAGAGGCATCATTTGGTTGTGAGGGAGATAGGCGAAGAGATTGATTTAGAAATTGGACCTGGGGATGACGATCCTTCTTTTGGCAATGCAACTCTAATTGGTGCTCCTCCAAGAGAATCTTCTGCTGAAGAGCATGGAGAGAGCAAGCAAATGGGGATGGGTTCTCAGCTTCCTAATGATGACCAGGATATGTCAAAGACACAACCAGCGAAAAGGAAGAAGAAGGTTGTGAAAAGATGGAGGGAGGAGTGGGCAGACACCTACAAATGGGCCTATGTTGATGTAAAAGATGGGACAGCAAGGATTTTCTGCTCTGTCTGCAGGGAGTATGGAAGAAAGCATAGAAGAAACCCTTATGGAAATGAGGGCAGTAGGAATATGCAAATGAGTGCCTTAGAAGAACACAATAATAGTTTGCTTCACAAAGAGGCTCTTCGTCTCCAAATGGCCTCCAAGGATAAAATCATTGTCGACAAGCCCATTTATGTCAAAGCTCTTATGTCAAAAACAGCGGGATCAATTGTTGAAGCTGCACTAAAAAGGGATCCTCATGAGGTTGAATTCATTCAGTCAGTCCAGGAAGCAGTTCATGCTCTTGAAAGAGTAATAGCCAAAAATTCACACTATGTCAGCATCATGGAGCGCTTGTTGGAACCAGAACGTATGATTGTTTTCAGAGTTCCGTGGGTTGATGATAGGGGTGAGACACATGTTAACCGTGGTTTTCGGGTACAATATAACCAGTCACTGGGTCCATGCAGGGGTGGTATTCGTTTTCATCCGTCAATGAATTTAAGTATTGCTAAGTTCCTTGGTTTTGAACAGACTTTAAAGAATGCCTTATCACCTTACAAATTAGGAGGGGCAGCTGGTGGGAGTGATTTTGATCCGAAAGGAAAAAGTGATAATGAGGTTATGCGCTTCTGCCAAAGCTATATGAATGAGATGTATCGTTACTTTGGTCCTGACAAGGACCTTCCATCGGAGGAGATGGGTGTTGGTACTAGAGAAATGGGATATCTCTTTGGACAGTATAGACGACTAGCTGGTCATTTTCAGGGAAGTTTCACAGGGCCGAGGATATTTTGGTCTGGCTCTAGTCTTCGAACTGAAGCTACTGGCTATGGTCTGGTTTTCTTTGCTCAGCTTATACTCGCTGACATGAATAAAGAACTCAAAGGATTAAGATGTGTCATAAGTGGTTCTGGAAAGATTGCATTGCATGTTTTAGAGAAGTTGATTGCTTATGGCGCTCTTCCCATCACAGTTTCAGATTCAAGAGGATATTTGGCTGACGAGGATGGATTTGATTACATGAAAGTATCTTTGTTGAGAGATATCAAAGCTCAACAGAGGAGTCTGAGAGACTATTCAAAGACCTATGCTCGATCCAAATATTATGATGAAGCAAAACCCTGGAGCGAAAGGTGTGATATCGCATTTGCTTGTGCATCCCAGAATGAGATTGATCAGTCTGATGCAATCAATTTGGTTAATTCAGGATGTCGTATGCTAGTAGAAGGTTCAAGCATGCCCTGTACACCAGAGGCAGCTGATGTTCTGAGGAAAGCTAACGTTCTTATTGCTCCTGCAATGGCTGCCGGTGCAGGAGGGGTTGTGGCTGGAGAACTTGAATTAAATCATCAGTGCAATTTGATGCACTGGTCACCAGAGGATTTTGAATCTAAATTGCAGGAAGCAATGAAACAGACTTATCAGAGAGCTATCAAAGCAGCATCTGACTTTGGTTATCAAAAGGAAAGTCCCGAGGCTTTGGTACATGGAGCTGTGATATCTGCATTTCTGACCATTTCTCAAGCTATGACTGATCAAGGCTGTGTATAG 1914 0.43 MLLPATGVGMNSAMDDMNLIQQAQRHHLVVREIGEEIDLEIGPGDDDPSFGNATLIGAPPRESSAEEHGESKQMGMGSQLPNDDQDMSKTQPAKRKKKVVKRWREEWADTYKWAYVDVKDGTARIFCSVCREYGRKHRRNPYGNEGSRNMQMSALEEHNNSLLHKEALRLQMASKDKIIVDKPIYVKALMSKTAGSIVEAALKRDPHEVEFIQSVQEAVHALERVIAKNSHYVSIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQYNQSLGPCRGGIRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEVMRFCQSYMNEMYRYFGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVISGSGKIALHVLEKLIAYGALPITVSDSRGYLADEDGFDYMKVSLLRDIKAQQRSLRDYSKTYARSKYYDEAKPWSERCDIAFACASQNEIDQSDAINLVNSGCRMLVEGSSMPCTPEAADVLRKANVLIAPAMAAGAGGVVAGELELNHQCNLMHWSPEDFESKLQEAMKQTYQRAIKAASDFGYQKESPEALVHGAVISAFLTISQAMTDQGCV 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0316 637 FunFam NADP-specific glutamate dehydrogenase 196 239 - -
Lele38g0316 637 FunFam Glutamate dehydrogenase 240 375 - -
Lele38g0316 637 FunFam Glutamate dehydrogenase 394 559 - -
Lele38g0316 637 Pfam Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 242 369 IPR006097 GO:0006520|GO:0016491
Lele38g0316 637 Pfam Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 388 635 IPR006096 GO:0006520|GO:0016491
Lele38g0316 637 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 378 400 IPR006095 GO:0006520|GO:0016491
Lele38g0316 637 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 299 313 IPR006095 GO:0006520|GO:0016491
Lele38g0316 637 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 420 440 IPR006095 GO:0006520|GO:0016491
Lele38g0316 637 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 557 568 IPR006095 GO:0006520|GO:0016491
Lele38g0316 637 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 197 381 IPR046346 -
Lele38g0316 637 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 388 635 IPR036291 -
Lele38g0316 637 MobiDBLite consensus disorder prediction 56 98 - -
Lele38g0316 637 SMART ELFV_dehydrog_3 389 635 IPR006096 GO:0006520|GO:0016491
Lele38g0316 637 Gene3D Glutamate Dehydrogenase, chain A, domain 3 197 239 - -
Lele38g0316 637 PANTHER NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED 142 637 - -
Lele38g0316 637 Gene3D - 394 559 - -
Lele38g0316 637 Gene3D Glutamate Dehydrogenase, chain A, domain 3 565 637 - -
Lele38g0316 637 FunFam NADP-specific glutamate dehydrogenase 567 637 - -
Lele38g0316 637 Gene3D Leucine Dehydrogenase, chain A, domain 1 240 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0316 Lele-ChrLele38 2499207 2506207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0316 234 515 EF-hand Containing Proteins AT5G07440 30.035 1.05e-31 123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0316 38 2499207 2506207 Lele38g0316 38 2499207 2506207 ECH
Lele38g0316 38 2499207 2506207 Lele39g1092 39 19486274 19493270 hybridization
Lele38g0316 38 2499207 2506207 Lele40g0295 40 2390818 2396655 hybridization