Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0411 ATGGCCGAAGAGCCCCAGAAAGCAGTTAAGGAAGTGGCGGCGGCGGCGGTGGCTGAGAAATCTGTTGTTGAAGAGAAAGAACACGAGAAGCCTGTCATCGAAGCAGAGCCCGAGAAGCCCGTCGTTGAGAGCGAGAAAAAAGATGAAGAAAAGCAGGCTGGGCCCACTGAGGAAGTTGCCGTCGAGGAGGAGAAGCCTAAGGCACCAGTAGTAGAAAGCAAAATTACGCAGTCTGTTTCTTTCAAGGAGGAGACCTATGTAGTCGCCGAGCTCCCTGAAGCTCAGAAGAACGCCCTTGATGATCTGAAACAGCTTATTCAAGAAGCACTGAACAAGCACGAGTTCACTGCTCCTCCTCCGCCGCCGCCGCTAGCGGCCGCTAAGGAGGAGGAAGAGAAGAAGGCCCCGGAGGTGGTGACAACGGAGGAGAAGAAGGAGGAGGACAAACCGGCGGAAGCTGAAGAAAAAACTGAAGCGGATCCTCCTAAGGAGGTTGCTGTTGCTGAAGAGCCAGCTAAGGTTGAGGCTGAAGCCGTTACTGAAGAGAAAAAGGAAGAGCAGAAGCCTGCGCATGAAGCTCCGGCTGTCGCCGAGGTGGTTGAAACTGTCACTGAAGAGAAAAAGGAGGAGGAGGAGCCTAAACCTGAGGCCGCCGCCGCCACAGAGGTTGTTGAAAAAGTTTCTATTGAAGTACAGGATGAATCTAAGACGGTGGAAACAATCAAAGAGACCATAGTTTCAGCCTCTGAGGAGGCAGCACCTGCAACTAAAGATGGTGAGGTTGCTGCTCCGGCACCGGAGGAGGTGGTGCCAGAAACGAAAGTGGAGGAGGATGTCACTGCGCCACCTCCGCCTCCACCGGAGGAGGTTTCAATCTGGGGAATTCCCCTGCTTGCGGATGAGAGGAGTGATGTGATACTCCTGAAATTCTTGAGAGCAAGGGATTTCAAGGTGAAGGACGCCTTCACGATGATCAAGAACACCGTTCGTTGGCGAAAGGAATTCGGAATCGACGCACTCGTTGACGAAGATCTCGGGAACGATTGGGACAAGGTGGCGTTCACTCATGGATATGACAAAGAAGGCCATCAAGTTTGCTACAACGTGTTTGGTGAGTTGAACAAGGAGTTGTACCAGAACACGTTTTCTGATGAGGAGAAACGCCAGAAGTTCATTAGATGGAGAATTCAGTTCTTGGAGAAGAGCGTTAGAAAATTTGACTACTCTCCAACTGGTATCTCTTCAATTGTTCAGGTCAATGATCTTAGGAATTCACCTGGATTGGGTAAGAGGGAACTCAGGCAAGCAACCAATCAGGCCCTTCAATTGCTTCAGGATAACTATCCTGAGTTCTTAGCCAAGCAGGTGTTTATCAATGTTCCATGGTGGTACCTGGCCTTCTCAAGGATGATCAGTCCATTCCTGACTCAGAGGACCAAAAGCAAATTTGTATTTGCTGGTTCATCCAAATCTACTGAAACCCTTTTCAAATATATAGCTCTTGAGCAAGTGCCTGTCCAGTATGGTGGATTGAGCAGGGAGGGTGACTATGAATTCACAACTGCTGACTCTGTTACTGAATTTACCATTAAACCATCAACAGAACATATTATAGAATTCCCAGCTTCTGAGCCGTGCCATCTGGTTTGGGAACTAAGAGTTGTGGGTTGGGAAGTGAGCTATGGTGCTGAATTCACGCCCAGTGCCGAAAACAAATATACCGTGATAGTACAGAAGAGCCGGAAAATTGGGGTTGCAGATGAAACCATAATCTCTAATGACTTCAAAATTGGGGAACCCGGTAAGGTTGTGCTCACCATTGATAACCAGACATCAAAGAAGAAGAAATTGCTCTACAGGTCCAAGACCAAACCCATCTCGGAGTGA 1887 0.4891 MAEEPQKAVKEVAAAAVAEKSVVEEKEHEKPVIEAEPEKPVVESEKKDEEKQAGPTEEVAVEEEKPKAPVVESKITQSVSFKEETYVVAELPEAQKNALDDLKQLIQEALNKHEFTAPPPPPPLAAAKEEEEKKAPEVVTTEEKKEEDKPAEAEEKTEADPPKEVAVAEEPAKVEAEAVTEEKKEEQKPAHEAPAVAEVVETVTEEKKEEEEPKPEAAAATEVVEKVSIEVQDESKTVETIKETIVSASEEAAPATKDGEVAAPAPEEVVPETKVEEDVTAPPPPPPEEVSIWGIPLLADERSDVILLKFLRARDFKVKDAFTMIKNTVRWRKEFGIDALVDEDLGNDWDKVAFTHGYDKEGHQVCYNVFGELNKELYQNTFSDEEKRQKFIRWRIQFLEKSVRKFDYSPTGISSIVQVNDLRNSPGLGKRELRQATNQALQLLQDNYPEFLAKQVFINVPWWYLAFSRMISPFLTQRTKSKFVFAGSSKSTETLFKYIALEQVPVQYGGLSREGDYEFTTADSVTEFTIKPSTEHIIEFPASEPCHLVWELRVVGWEVSYGAEFTPSAENKYTVIVQKSRKIGVADETIISNDFKIGEPGKVVLTIDNQTSKKKKLLYRSKTKPISE 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0411 628 Gene3D - 285 334 - -
Lele31g0411 628 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 342 516 IPR001251 -
Lele31g0411 628 Gene3D - 351 527 IPR036865 -
Lele31g0411 628 SMART CRAL_TRIO_N_2 303 328 IPR011074 -
Lele31g0411 628 MobiDBLite consensus disorder prediction 126 192 - -
Lele31g0411 628 MobiDBLite consensus disorder prediction 20 70 - -
Lele31g0411 628 MobiDBLite consensus disorder prediction 268 287 - -
Lele31g0411 628 ProSiteProfiles GOLD domain profile. 518 623 IPR009038 -
Lele31g0411 628 Pfam CRAL/TRIO, N-terminal domain 288 327 IPR011074 -
Lele31g0411 628 MobiDBLite consensus disorder prediction 110 222 - -
Lele31g0411 628 PRINTS Cellular retinaldehyde-binding protein signature 306 328 - -
Lele31g0411 628 PRINTS Cellular retinaldehyde-binding protein signature 468 487 - -
Lele31g0411 628 CDD SEC14 347 511 IPR001251 -
Lele31g0411 628 Gene3D GOLD domain 528 623 - -
Lele31g0411 628 MobiDBLite consensus disorder prediction 201 219 - -
Lele31g0411 628 MobiDBLite consensus disorder prediction 1 70 - -
Lele31g0411 628 SMART sec14_4 347 513 IPR001251 -
Lele31g0411 628 SUPERFAMILY CRAL/TRIO domain 353 513 IPR036865 -
Lele31g0411 628 Pfam CRAL/TRIO domain 351 510 IPR001251 -
Lele31g0411 628 SUPERFAMILY CRAL/TRIO N-terminal domain 88 344 IPR036273 -
Lele31g0411 628 PANTHER PATELLIN-1 178 625 IPR044834 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0411 Lele-ChrLele31 11587745 11590700 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0411 307 505 Acyl Lipid Metabolism Gene Families AT5G47730 27.315 6.37e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1154 29 13357066 13359022 Lele31g0411 31 11587745 11590700 hybridization