Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1154 ATGGCCGATGAAGATTCAAATCCAACCCTTTCTGTCACTGAGAAAAAGGAATTAGTGCAGCCGACGGTTACGACTGAGTCTGATTCGCCCGCTATAGCATCTGCCTCAGCTGTAGTTTCCGACTCGGCGACGGTTAATACTGAAAATACAGACCTGCCTCCTCCCCCGCCGCCGTCGGAATCACTGGCTGAAGAAGCTACTTCAGTGGTAGCGACAGAGCCGTCGCCGCCACCAACGACTGAGGACAGCGATGCAAAAGCTACAAGTTCAGACACTAAAGAGGATGCTGTTGTGAGTCAGGATGAGAGATCGAATAAGTTGCCTCAGAATCTAGTCTCGTTCAAGGAAGAGAGCAACTTAGTGGCTGATCTCTCGGATTCTCAGAGAAATGCTCTTGAAGAGTTGAAGAAGCTGGTTCGAGAGGCACTAGACACTCATCAGTTCACTTCTTCGGGATCAATCAAAAAGACGCCGGTGCCCACTGAAACCACCCCAGCAGCTAAGGAAGCTGCGAAAGCTGAAGGAGCCACTTCGGAATCAGATGCCAGCACGGAGGTACACGCACCGCCTGAGACCAAAATTGAAGAAAACCCAGTGAAGGAAGCAGAGGAAGTAGCGAAAGAAACATCCGAGGAACCTGTATTCATATGGGGAGTTCCTCTGCTCAAAGATGACAGGAGTGATGTGATTCTGCTCAAGTTTCTTAGAGCCCGAGATTTCAAAGTGAAGGATGCGTTTGTCATGATTAAGAACACAATAAGCTGGAGGAAAGAGTTCAATATTGATGCACTTGTGAGTGAAGATTTAGGAGATGATCTGGACAAAGTGGTATTCATGCACGGATATGATAGAGAAGGGCATCCCGTTTGTTATAATGTCTATGGTGAATTTCAGAACAAGGAGTTGTACCAGAAGACATTCTCAGATGAAGATAAACGAGCCAAGTTCCTCCGATGGCGGATACAATTCTTGGAAAGGAGTATTAGGAAGCTTGATTTTACTCCTGGTGGTGTCAATACCATTTTCCAAGTTAACGACCTTAAAAATTCTCCTGGGCCTGGCAAGCGGGAGCTTCGAATTGCCACTAAACAAGCCTTGCAATTGCTTCAGGACAATTATCCCGAGTTTGTTGCCAAACAGGTTTTTATCAATGTGCCATGGTGGTATCTTGCATTCTATACCATGATGAGTCCATTCTTGACCCAGAGGACCAAAAGCAAATTTGTTTTTGCAGGCCCATCAAAGTCCGCGGAAACCCTTTTCAAGTATATTTCTCCTGAGCAAGTGCCAATTCAATATGGTGGCCTAAGTGTTGATTTATGTGAATGCAACCCAGAATTCAGCATGTCTGATCCAGTCACGGAGATACCTATAAAACCAACCACAAAGCAAACTGTGGAAATCATTATTTATGAAAAATGCATTATTGTGTGGGAGCTGCGAGTCGTGGGCTGGGAGGTCAGCTATAGTGCGGAATTCAAACCTGATGCAAAAGATGGATATACAGTTATCATACAGAAGGCCACAAAGATGTCCTCAACTGATGAGCCCGTGGTTTCCAATAGCTTTAAAGTTGGTGAACTGGGCAAGATATTGCTTACCGTTGACAATTCCACATTGAAAAAGAAGAGGCTTCTGTACAGGTTCAAGATCAAACCTCTCAGTGATTGA 1671 0.453 MADEDSNPTLSVTEKKELVQPTVTTESDSPAIASASAVVSDSATVNTENTDLPPPPPPSESLAEEATSVVATEPSPPPTTEDSDAKATSSDTKEDAVVSQDERSNKLPQNLVSFKEESNLVADLSDSQRNALEELKKLVREALDTHQFTSSGSIKKTPVPTETTPAAKEAAKAEGATSESDASTEVHAPPETKIEENPVKEAEEVAKETSEEPVFIWGVPLLKDDRSDVILLKFLRARDFKVKDAFVMIKNTISWRKEFNIDALVSEDLGDDLDKVVFMHGYDREGHPVCYNVYGEFQNKELYQKTFSDEDKRAKFLRWRIQFLERSIRKLDFTPGGVNTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFYTMMSPFLTQRTKSKFVFAGPSKSAETLFKYISPEQVPIQYGGLSVDLCECNPEFSMSDPVTEIPIKPTTKQTVEIIIYEKCIIVWELRVVGWEVSYSAEFKPDAKDGYTVIIQKATKMSSTDEPVVSNSFKVGELGKILLTVDNSTLKKKRLLYRFKIKPLSD 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1154 556 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 266 441 IPR001251 -
Lele29g1154 556 MobiDBLite consensus disorder prediction 86 101 - -
Lele29g1154 556 MobiDBLite consensus disorder prediction 102 124 - -
Lele29g1154 556 SUPERFAMILY CRAL/TRIO domain 276 444 IPR036865 -
Lele29g1154 556 SMART sec14_4 271 438 IPR001251 -
Lele29g1154 556 MobiDBLite consensus disorder prediction 1 124 - -
Lele29g1154 556 SMART CRAL_TRIO_N_2 227 252 IPR011074 -
Lele29g1154 556 FunFam SEC14 cytosolic factor family protein 271 451 - -
Lele29g1154 556 ProSiteProfiles GOLD domain profile. 441 551 IPR009038 -
Lele29g1154 556 Coils Coil 121 145 - -
Lele29g1154 556 PANTHER PATELLIN-1 81 553 IPR044834 GO:0008289
Lele29g1154 556 Gene3D - 150 451 IPR036865 -
Lele29g1154 556 MobiDBLite consensus disorder prediction 1 49 - -
Lele29g1154 556 Pfam CRAL/TRIO domain 276 435 IPR001251 -
Lele29g1154 556 Gene3D GOLD domain 453 551 - -
Lele29g1154 556 MobiDBLite consensus disorder prediction 65 85 - -
Lele29g1154 556 SUPERFAMILY CRAL/TRIO N-terminal domain 119 267 IPR036273 -
Lele29g1154 556 MobiDBLite consensus disorder prediction 149 199 - -
Lele29g1154 556 Pfam CRAL/TRIO, N-terminal domain 217 251 IPR011074 -
Lele29g1154 556 PRINTS Cellular retinaldehyde-binding protein signature 230 252 - -
Lele29g1154 556 PRINTS Cellular retinaldehyde-binding protein signature 393 412 - -
Lele29g1154 556 CDD SEC14 272 436 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1154 Lele-ChrLele29 13357066 13359022 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1154 231 430 Acyl Lipid Metabolism Gene Families AT1G55840 27.523 7.78e-09 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1154 29 13357066 13359022 Lele31g0411 31 11587745 11590700 hybridization