Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0237 ATGAACTCTCACGTTTCAAAATCCAAACTTTCTACTGCCTTGTTACTCTCTGAAGCGTCAAGCTCTACCAGCAGTGGAACCGAAGAAACCAGTTCCTTTTCTCTGCAACACACGAAGCTTATTTCTAAATCCTTCTCATCACATCGCCCATTGGCCATTCTTTCTGGACATATTTCCTCTGTTTCTTGTTTATCTCTATGTGGAGATTTCATTCTGAGTGCCTCTCAGAGCAAAGACATCATCGTATGGCAAAAGCAAAACCCAGATTTCAAGCTTCTCAACAAGTTCGGACATGGAGATGGATCCGTTAAGTCCCTCGTCACCGCCGGAAACAAGATCTTCTCTGCTCATCAAGATGGGAAAATCAGAGTCTGGAAGATTTCTAGGAGCACAGAGAATAATGTGTTCAAGCTTGTGGAAATTCTGCCGACAACAAAGGATTATTTGGGGAAATTCATGAAACAGAGTAACTATGTCCAAACAAGAAGACACCACAAACGTCTGTGGATTGAGCATTCAGATAGCATCTCCTGCTTAACGGTTTGTAATGGTTTGATCTATTCGGGTTCATGGGACAAGACCCTTAAGGTGTGGAAGCTATCTAGCTTCAAGTGTTTAGAATCCATTAAAGCTCATGATGATGCCATTAATGGCTTAGTAGCCTGTAAAGGGGTTGTTTATTCTGCTTCTGCAGATGGAAAAATCAAAGCTTGGGGAAGAAAAGAGGGAAAGAACAAGAACAAGAAGAAGATATCACATTGTTTAAAAGGGGTTTTAAAGGGCCATCATAAAGATTCATCCTTTAATTGTGTAGTTGTTTCCCAAGCTGGGAAATGGATATATGGAGGGGATTCTAATGGTTTTATAATGGAATGGGAGAAAATCGAGGGGGGTTTGATCAATCAGACCAACCCCGATATGATAAACCAATGTCTTAACCAGTTCAGTGAATCGTGGAAGCTTGTAAGTGGGACAAGAGCACATGAAACGGCTGTTTTGTGCATGTGTTTAAGGGGGGAGATTTTGTTAAGTGGATCTTCAGATAAAAAAATAGGGATTTGGAAGAGAGAGGGATTTAATGCGAGGCTTTGTAAAATTGGGGTAATGAGTGGACATGAAGGGCCAGTGAAGTGTTTGGAGGCATCTTGTAGAAGTACAAGTGATGGTGGTTTTTTGCTTTATAGTGGAAGCATGGACAAAAGCTTGAGAGTTTGGTGGGTTTCTATGAACAATGAGGAAGATGCAGATGAAAATTCTAGTGTTATTTCATGA 1272 0.4088 MNSHVSKSKLSTALLLSEASSSTSSGTEETSSFSLQHTKLISKSFSSHRPLAILSGHISSVSCLSLCGDFILSASQSKDIIVWQKQNPDFKLLNKFGHGDGSVKSLVTAGNKIFSAHQDGKIRVWKISRSTENNVFKLVEILPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHSDSISCLTVCNGLIYSGSWDKTLKVWKLSSFKCLESIKAHDDAINGLVACKGVVYSASADGKIKAWGRKEGKNKNKKKISHCLKGVLKGHHKDSSFNCVVVSQAGKWIYGGDSNGFIMEWEKIEGGLINQTNPDMINQCLNQFSESWKLVSGTRAHETAVLCMCLRGEILLSGSSDKKIGIWKREGFNARLCKIGVMSGHEGPVKCLEASCRSTSDGGFLLYSGSMDKSLRVWWVSMNNEEDADENSSVIS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0237 423 Gene3D - 248 422 IPR015943 GO:0005515
Lele31g0237 423 SUPERFAMILY WD40 repeat-like 48 407 IPR036322 GO:0005515
Lele31g0237 423 FunFam BnaA09g28200D protein 159 243 - -
Lele31g0237 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 208 IPR001680 GO:0005515
Lele31g0237 423 Gene3D - 148 247 IPR015943 GO:0005515
Lele31g0237 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 369 405 IPR001680 GO:0005515
Lele31g0237 423 Pfam WD domain, G-beta repeat 93 126 IPR001680 GO:0005515
Lele31g0237 423 Pfam WD domain, G-beta repeat 171 199 IPR001680 GO:0005515
Lele31g0237 423 Pfam WD domain, G-beta repeat 50 83 IPR001680 GO:0005515
Lele31g0237 423 Pfam WD domain, G-beta repeat 366 405 IPR001680 GO:0005515
Lele31g0237 423 Gene3D - 31 145 IPR015943 GO:0005515
Lele31g0237 423 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 5 410 IPR045182 -
Lele31g0237 423 SMART WD40_4 362 406 IPR001680 GO:0005515
Lele31g0237 423 SMART WD40_4 252 293 IPR001680 GO:0005515
Lele31g0237 423 SMART WD40_4 162 199 IPR001680 GO:0005515
Lele31g0237 423 SMART WD40_4 318 355 IPR001680 GO:0005515
Lele31g0237 423 SMART WD40_4 47 84 IPR001680 GO:0005515
Lele31g0237 423 SMART WD40_4 202 239 IPR001680 GO:0005515
Lele31g0237 423 SMART WD40_4 89 126 IPR001680 GO:0005515
Lele31g0237 423 PRINTS G protein beta WD-40 repeat signature 113 127 IPR020472 -
Lele31g0237 423 PRINTS G protein beta WD-40 repeat signature 393 407 IPR020472 -
Lele31g0237 423 PRINTS G protein beta WD-40 repeat signature 186 200 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0237 Lele-ChrLele31 2422048 2423319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0237 159 405 Miscellaneous Gene Families AT5G08390 21.961 6.68e-07 49.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1340 29 20039715 20041001 Lele31g0237 31 2422048 2423319 hybridization