Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1340 ATGAACTCCCACGTTTCAAAATCCAAACTTTCTCCTTCCTTGTTACTCTCTGAAGCATCAAGCTCTACCAGCAGTGGAACCGAAGAAACCAGTTCCTTTCCTCTGCAACACACGAAGCTTATTTCTAAATCCTTCTCAACACATCGCCCATTGGCCATTCTTTCTGGACATATTTCCTCTGTTTCTTGTTTATCTCTATGTGGAGATTTCATTCTGAGTGCCTCTCAGAGCAAAGACATCATCGTACGGCATAATCAAAACCCAGGTTTCAAGCTTCTCAACAAGTTCGGACATGGAGATGGATCCGTTAAATCCCTCGTCACCACAGGAAACAAGATCTTCTCTGCTCATCAAGATGGGAAAATCAGAGTCTGGAAGATTTCTAGGAGCACAGAGAATAATGTGTTCAAGCTTGTGGAAACTCTGCCGACAACAAAGGATTATTTGGGGAAATTCATGAAACAGAGTAACTATGTCCAAACAAGAAGACACCACAAACGTTTGTGGATTGAGCATTCAGATAGCATCTCCTGCTTAACTGTTTGTAATGGTTTAATCTATTCTGGTTCATGGGACAAGACCCTTAAGGTGTGGAAGCTATCTAGCTTCAAGTGTTTAGAATCCATTAAAGCTCATGATGATGCCATTAATGGCTTAGTAGCATGTAAAGGGGTTGTTTATTCTGCTTCTGCAGATGGAAAAATCAAAGCTTGGGGAAGAAAAGAGGGAAAGAACAAGAAGAACAAGAACAAGAAGAAGATATCACATTGTTTAAAAGGGGTTTTAAAGGGCCATCATAAAGATTCGTCCTTTAATTGTGTAGTTGTTTCTCAATCTGGGAAATGGATATATGGAGGGGATTCTAATGGTTTTATAATGGAATGGGAGAAAATCGAGGGGGGTTTGATCACTCAGACCAACCCCGATATGATAAACCCGTGCCTTAACCAGTTCAGTGAATCGTGGAAGCTTATAAGTGGGATAAGAGCACATGAAACGGCTGTTTTGTGCATGTGTTTAAGGGGGGAGATTTTGTTAAGTGGATCTTCAGATAAAAAAATAGGGATTTGGAAGAGAGAGGGATTTAATGGGAGGCTTTGTAAAATTGGGGTAATAAGTGGACATGAAGGGCCAGTGAAGTGTTTGGATGCATCTTGTAGAAGTACAAGTGATGGTGGTTTTTTGCTCTATAGTGGAAGCATGGACAAAAGCTTGAGGGTTTGGTGGGTTTCTATGAACAATGAGGAAGATGCAGAAGAAAATTCTAGTGTTATTTCAGGTGAATGA 1287 0.4056 MNSHVSKSKLSPSLLLSEASSSTSSGTEETSSFPLQHTKLISKSFSTHRPLAILSGHISSVSCLSLCGDFILSASQSKDIIVRHNQNPGFKLLNKFGHGDGSVKSLVTTGNKIFSAHQDGKIRVWKISRSTENNVFKLVETLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHSDSISCLTVCNGLIYSGSWDKTLKVWKLSSFKCLESIKAHDDAINGLVACKGVVYSASADGKIKAWGRKEGKNKKNKNKKKISHCLKGVLKGHHKDSSFNCVVVSQSGKWIYGGDSNGFIMEWEKIEGGLITQTNPDMINPCLNQFSESWKLISGIRAHETAVLCMCLRGEILLSGSSDKKIGIWKREGFNGRLCKIGVISGHEGPVKCLDASCRSTSDGGFLLYSGSMDKSLRVWWVSMNNEEDAEENSSVISGE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1340 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 372 408 IPR001680 GO:0005515
Lele29g1340 428 Pfam WD domain, G-beta repeat 260 293 IPR001680 GO:0005515
Lele29g1340 428 Pfam WD domain, G-beta repeat 171 199 IPR001680 GO:0005515
Lele29g1340 428 Pfam WD domain, G-beta repeat 93 126 IPR001680 GO:0005515
Lele29g1340 428 Pfam WD domain, G-beta repeat 369 408 IPR001680 GO:0005515
Lele29g1340 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 208 IPR001680 GO:0005515
Lele29g1340 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 328 358 IPR001680 GO:0005515
Lele29g1340 428 SUPERFAMILY WD40 repeat-like 45 131 IPR036322 GO:0005515
Lele29g1340 428 SUPERFAMILY WD40 repeat-like 168 410 IPR036322 GO:0005515
Lele29g1340 428 FunFam BnaA09g28200D protein 159 243 - -
Lele29g1340 428 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 7 413 IPR045182 -
Lele29g1340 428 PRINTS G protein beta WD-40 repeat signature 186 200 IPR020472 -
Lele29g1340 428 PRINTS G protein beta WD-40 repeat signature 396 410 IPR020472 -
Lele29g1340 428 PRINTS G protein beta WD-40 repeat signature 113 127 IPR020472 -
Lele29g1340 428 Gene3D - 151 247 IPR015943 GO:0005515
Lele29g1340 428 Gene3D - 40 150 IPR015943 GO:0005515
Lele29g1340 428 SMART WD40_4 321 358 IPR001680 GO:0005515
Lele29g1340 428 SMART WD40_4 47 84 IPR001680 GO:0005515
Lele29g1340 428 SMART WD40_4 162 199 IPR001680 GO:0005515
Lele29g1340 428 SMART WD40_4 202 239 IPR001680 GO:0005515
Lele29g1340 428 SMART WD40_4 89 126 IPR001680 GO:0005515
Lele29g1340 428 SMART WD40_4 365 409 IPR001680 GO:0005515
Lele29g1340 428 SMART WD40_4 255 296 IPR001680 GO:0005515
Lele29g1340 428 Gene3D - 248 427 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1340 Lele-ChrLele29 20039715 20041001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1340 159 408 Miscellaneous Gene Families AT5G08390 22.093 9.27e-08 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1340 29 20039715 20041001 Lele31g0237 31 2422048 2423319 hybridization