Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1371 ATGATGAAGCTGAGCATCGTACTGGCGGTCGCGGGCATGTTAATTGCGGCGGCCAGCGCTCAGTCCGTGGCCGATATCGTCACGACTGAGTTCTTCAATAGCATCATAGAAGAGGCCGACGCCAGCTGTGCCGGCAAGAACTTCTACACCCGAGCTGCCTTCCTGGACGCTCTCAAGTCCTACTCTCAATTCGGCAGCCTCGCTTCTGCCGACGACTCCAAACGCGAGATCGCTGCGGCTTTCGCCCATTTCACCCACGAGACTGGACATTTTTGCTACATAGAAGAGATAGGCGGTGCATCTCAGGATTACTGTGACGAAACCGTCACACAGTACCCATGCGCCCCCAACAAAGGATACTATGGTCGCGGACCCATTCAGCTGTCGTGGAACTTCAACTATGGACCCGCCGGAGAGAGCATCGGGTTCGATGGGCTGAACGCGCCCGAAACGGTGGCGAATGATGCGGTGGTGTCCTTCAAGACGGCTCTCTGGTACTGGATGCAACACGTGCGGCCCGTCCTCAACCAAGGGTTCGGCGCCACCATTAGAGCCATCAATGGGAGGCTGGAATGCGACGGCGCTAACCCCAACACTGTTCAGGCTCGTGTTAATTACTACACCCAATACTGTTCTCAGCTGGGTGTTGCTCCTGGTGATAATCTTACTTGCTAG 675 0.5585 MMKLSIVLAVAGMLIAAASAQSVADIVTTEFFNSIIEEADASCAGKNFYTRAAFLDALKSYSQFGSLASADDSKREIAAAFAHFTHETGHFCYIEEIGGASQDYCDETVTQYPCAPNKGYYGRGPIQLSWNFNYGPAGESIGFDGLNAPETVANDAVVSFKTALWYWMQHVRPVLNQGFGATIRAINGRLECDGANPNTVQARVNYYTQYCSQLGVAPGDNLTC 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1371 224 CDD chitinase_GH19 27 224 - -
Lele30g1371 224 PIRSF Endochitinase 5 224 IPR016283 GO:0004568|GO:0005975
Lele30g1371 224 SUPERFAMILY Lysozyme-like 22 224 IPR023346 -
Lele30g1371 224 FunFam Endochitinase (Chitinase) 95 154 - -
Lele30g1371 224 ProSitePatterns Chitinases family 19 signature 1. 43 65 IPR000726 GO:0004568|GO:0006032|GO:0016998
Lele30g1371 224 Gene3D - 21 224 - -
Lele30g1371 224 Pfam Chitinase class I 177 224 IPR000726 GO:0004568|GO:0006032|GO:0016998
Lele30g1371 224 Pfam Chitinase class I 26 170 IPR000726 GO:0004568|GO:0006032|GO:0016998
Lele30g1371 224 Gene3D Endochitinase, domain 2 95 152 - -
Lele30g1371 224 PANTHER CHITINASE-RELATED 19 224 - -
Lele30g1371 224 FunFam Endochitinase PR4 17 103 - -
Lele30g1371 224 ProSitePatterns Chitinases family 19 signature 2. 158 168 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1371 Lele-ChrLele30 15863233 15863996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1371 18 224 Glycoside Hydrolase AT3G54420 76.812 3.58e-120 341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1371 30 15863233 15863996 Lele31g1520 31 20392316 20392986 hybridization
Lele30g1371 30 15863233 15863996 Lele32g0022 32 161567 162330 hybridization