Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1103 ATGGCTCCAAAGCGTGCTGAGAATACCGTGGTCACATCCACCAGAAAAATTGTGCAAGAAAGCACGGTTCAAGTTTCCGTTGTGAAAAGATCAACGAGAGCAAACAAAGACACCGAATCAGAAGAAGCAAACACTTTAACCAGGGACCATGTGAGAACCATTCCTGTCCAAGAAGTGACTCCTCAAACTGCAGGTGACACCACGAAAGACCCTGAACAGAAAAGAGAGCAACCAGTGCAGGAAGGAACTGAAGGGAAAGGTGGTGGTGGAAATAAAGGGACGAAAAGGAAGAGAAAGAAGGCGGAAAAAGGTGGGGGAGAGTACAGGAGGTATGTGTACAGAGTTCTAAAGCAAGTTCACCCAGAGCTGGGGATTTCGTTTCAGGCCATGACCATTCTGAATAACCTCATGACTGATATGTTCGAGAGGCTTGCAGATGAAGCTACGAGGCTGAAGACCTACACGGGACACATGACATTGTCTTCCAGGGAGATCCAAGGGGCTGTCAAGCTGGTTCTTCCCGGGGAGCTTGGAAGGCATGCCATTGCTGAAGGTGCCAAAGCCGTCAATAATTATATGTCCAGCGATGCTCGTCACTAG 600 0.485 MAPKRAENTVVTSTRKIVQESTVQVSVVKRSTRANKDTESEEANTLTRDHVRTIPVQEVTPQTAGDTTKDPEQKREQPVQEGTEGKGGGGNKGTKRKRKKAEKGGGEYRRYVYRVLKQVHPELGISFQAMTILNNLMTDMFERLADEATRLKTYTGHMTLSSREIQGAVKLVLPGELGRHAIAEGAKAVNNYMSSDARH 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1103 199 Pfam Core histone H2A/H2B/H3/H4 84 171 IPR007125 GO:0003677
Lele30g1103 199 Gene3D Histone, subunit A 63 196 IPR009072 GO:0046982
Lele30g1103 199 PRINTS Histone H2B signature 108 126 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lele30g1103 199 PRINTS Histone H2B signature 127 147 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lele30g1103 199 PRINTS Histone H2B signature 179 192 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lele30g1103 199 PRINTS Histone H2B signature 149 166 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lele30g1103 199 PRINTS Histone H2B signature 166 179 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lele30g1103 199 FunFam Histone H2B 67 195 - -
Lele30g1103 199 MobiDBLite consensus disorder prediction 26 104 - -
Lele30g1103 199 MobiDBLite consensus disorder prediction 32 48 - -
Lele30g1103 199 SUPERFAMILY Histone-fold 85 195 IPR009072 GO:0046982
Lele30g1103 199 PANTHER HISTONE H2B 77 194 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lele30g1103 199 SMART h2b3 95 194 IPR000558 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1103 Lele-ChrLele30 14131892 14132491 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1103 30 14131892 14132491 Lele32g0290 32 1808368 1811995 hybridization