Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0564 ATGAGGGAGGAAGAAATTGAGAAGCTTCGAGGTGTTGTGAGGGACTGCGTAAGCAAGCACCTCTACTCTTCTGCCATCTTCTTCGCAGACAAAGTCGCTGCTTTTACGAATGATCCCGCCGATATCTACATGCAGGCTCAGGCCCTCTTCCTCGGCCGCCATTACCGTCGTGCCTTTCATCTCCTCAATGCCTCTAAGATAGTTCTCCGTGATCTCCGCTTCCGCTACCTCGCTGCCAAGTGTCTCGAGGAGCTCAAGGAATGGGATCAATGCCTATTAATGCTGGGTGAGGCTAAAGTGGATGAACAAGGCAATGTTTCAGATACAAAGGATTCTAATGTCATGTACTTGGATAAAGATGGTGAAGACCGTGAGATCAATATTTCTTCTGCAATATGTTTCTTAAGAGGCAAAGCACATGAAGCTCTAGATAACCGTGCCCAGGCTCGATTGTGGTACAGAGCTGCTATAAAAGCGGACCCTTTATGCTATGAGGCTCTGGAATGTCTTATTGAAAATCACATGCTCACGTGTGAGGAGGAATCAAATTTGATCTCATCGTTGCAATTTGGTAGTGAAGATGGATGGCTTTCATCATTCTATTCCTGCTTGATAAAGAAGTATGAGAAGGAAAATGCTGTGGAAGCAAAGTTTCGAGACCTTGAGAACACAAGCTGTAAAATTGACCAATCTAATCCTTCTTTCTTGCGTACACTGAAAACCAATACTGACCTATTAGCCTGCAAAGCTGAATACTACTATCAGTGTGGTGAATATCAGAAATGTTTTGAGTTAACATCTGTTCTGCTTGAGAAGGATCCTTTCCACAACAAGACTACCTTAGTACATCTGGGAGCTGCTATGGAGCTTGGACATTCTAATGAGCTCTATCTGATGGCATGCAATCTTGTGAAGGATTATCCTCAAAAGGCTTTATCTTGGTTTGCGGTTGGTTGCTATTACTATTGTATCAAGAAGTATGACCAGTCCCGTCGATATTTCAGCAAGGCAACAAGTCTAGATGGAATATTTGCACCAGCCTGGATAGGCTATGGGAATGCTTATGCTGCTAAAGAAGAGGGTGATCAAGCTATGTCAGCTTACCGCACTGCAGCTCGTTTATTTCCCGGGTGCCATTTGCCAACTCTTTACATTGGAATGGAATGCATGCGAACTCACAGCTATAGGCTTGCTGAGCAGTTCTTTTTGCAGGCTAAGGCGATTTGCCCCTCGGATCCACTTGTATTCAATGAACTTGGAGTTGTTGCCTACCATATGCAAGAGTACAATAAAGCAGTATGGTGGTTTGAGAAAACATTAGCCCTCATCTCATCCTCTTTAAGTGAAATGTGGGAACCAACTGTAGTTAATCTCGCGCATGCCTACAGGAAGTTGAAGATGTATGATGAAGCAATTTCATACTACGAGAAAGCACTTGCATTATCAACACGAAGTTTGAGTACGTATGCTGGTCTAGCATATACATACCACTTGCAGGATGACTTCACTACAGCTATTACTTACTATCACAAAGCTTTGTGGCTTAAACCAGATGACCAGTTCTGCACTGAAATGTTAAGTTGGGCTCTCATAGACGAAAGCCGATGTGGGGCCCCGTCTATCCCTTAG 1629 0.4383 MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAAFTNDPADIYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWDQCLLMLGEAKVDEQGNVSDTKDSNVMYLDKDGEDREINISSAICFLRGKAHEALDNRAQARLWYRAAIKADPLCYEALECLIENHMLTCEEESNLISSLQFGSEDGWLSSFYSCLIKKYEKENAVEAKFRDLENTSCKIDQSNPSFLRTLKTNTDLLACKAEYYYQCGEYQKCFELTSVLLEKDPFHNKTTLVHLGAAMELGHSNELYLMACNLVKDYPQKALSWFAVGCYYYCIKKYDQSRRYFSKATSLDGIFAPAWIGYGNAYAAKEEGDQAMSAYRTAARLFPGCHLPTLYIGMECMRTHSYRLAEQFFLQAKAICPSDPLVFNELGVVAYHMQEYNKAVWWFEKTLALISSSLSEMWEPTVVNLAHAYRKLKMYDEAISYYEKALALSTRSLSTYAGLAYTYHLQDDFTTAITYYHKALWLKPDDQFCTEMLSWALIDESRCGAPSIP 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0564 542 ProSiteProfiles TPR repeat profile. 345 378 IPR019734 GO:0005515
Lele30g0564 542 ProSiteProfiles TPR repeat profile. 452 485 IPR019734 GO:0005515
Lele30g0564 542 ProSiteProfiles TPR repeat profile. 486 519 IPR019734 GO:0005515
Lele30g0564 542 Gene3D Tetratricopeptide repeat domain 5 532 IPR011990 GO:0005515
Lele30g0564 542 SMART tpr_5 345 378 IPR019734 GO:0005515
Lele30g0564 542 SMART tpr_5 243 276 IPR019734 GO:0005515
Lele30g0564 542 SMART tpr_5 413 446 IPR019734 GO:0005515
Lele30g0564 542 SMART tpr_5 452 485 IPR019734 GO:0005515
Lele30g0564 542 SMART tpr_5 486 519 IPR019734 GO:0005515
Lele30g0564 542 SMART tpr_5 379 412 IPR019734 GO:0005515
Lele30g0564 542 SMART tpr_5 311 344 IPR019734 GO:0005515
Lele30g0564 542 SMART tpr_5 130 163 IPR019734 GO:0005515
Lele30g0564 542 Pfam Tetratricopeptide repeat 132 161 IPR019734 GO:0005515
Lele30g0564 542 SUPERFAMILY HCP-like 313 520 - -
Lele30g0564 542 Pfam Anaphase-promoting complex, cyclosome, subunit 3 19 97 - -
Lele30g0564 542 SUPERFAMILY TPR-like 37 173 IPR011990 GO:0005515
Lele30g0564 542 Pfam Tetratricopeptide repeat 456 513 - -
Lele30g0564 542 PANTHER CELL DIVISION CYCLE 16,23,27 22 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0564 Lele-ChrLele30 10440352 10451560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0564 290 518 Glycosyltransferase AT3G04240 23.581 1.10e-10 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0564 30 10440352 10451560 Lele31g0696 31 14814390 14822967 hybridization
Lele30g0564 30 10440352 10451560 Lele32g0814 32 5400221 5408874 hybridization