Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0407 ATGTCCTCCGCTAATCCTTACGAAATCATTGACGACGATGGCGAAGCGTTTGATTGGGATGCTGCTGCACGAGAAATCGATGCGGCTTGCCAAGTCACGAAGCCCTCCACTTCACTTGTTGGTGATACTTCCAATTCGCGCCAAATGACTTTAGATAAATTTTTGGGTAAGAAGGAAACCCCAAGAGCTCAACTTGAGGATCCCAAGATCGGCAAGAATGAGCAAGATTGCTTCGTAGGAGGTAAAGGGGCGAGCTGCATTGAGGTTGATTCTGAGGCAGTCAAAACTTGGATATACCCAGTCAATGTTCCTCTTCGTGACTACCAATTTGCTATAACAAAGTCTGCTATTTTTTCAAACACATTGGTGGCATTGCCAACAGGACTTGGGAAAACTCTAATTGCTGCAGTGGTCATGTACAACTACTTCCGATGGTTTCCTAGAGGGAAAATTGTCTTTACTGCTCCTTCTCGGCCACTCGTTATGCAACAGATAGAAGCGTGCCATAATATTGTAGGAATACCTCAAGTAAGTACTGTTTCTAGTTGTAAATGTTTGGTGAAATACTTGGTATGTTTGGTAGTTGATGAAGCCCATAGAGCAATGGGAAATTACTCTTATTGTGAAGTAGTTCGTGAGTTAATGGCTATGCCAATGCAACTGCGAATACTGGCTTTAACTGCAACACCAGGAGCAAAGCAGCAAACAGTCCAGCAAGTCATTGATAATCTGCATATCTCCAAGCTTGAATATCGCAATGAAAATGATCCCGATGTTATCTCATATGTTCACAAAAGGAAGATAGAGTTGATTCAGGTTGCAATGGGTCAAGATGCTGTAGAAATAAACAAGCAGCTTTTGGAAGTAATACGCCCAATTGTAGGTCGGCTCTCAGCAATGGGAGTTCTCAAGAATAGAGATTACCGCACTTTGAGCCCTTGTGAATTACTTGAAATACGGGAAAAGTTTCGTCAAGCACATCCACAAGATATTTCCAATGTCAACAATGTAGATGTTGAGGGCTATTTTGGAGTTCTTATTAGTCTTTACTACATCCATAAGCTACTTTCAAGTCATGGAATCAGGCCAGCGCACGAGATGCTTGAAAGAAAATTGATGCAAGGATTTTTCGCAAAATATGTGAGTAAAAATGAAGCTCTTCTGAAAGCAAGGATGTTAATGCAGCAAAACTTATCTCATGGCGCACCAAGTCCCAAGTTGTCCAAAATGCTTGAAATATTGCTGGAACATTTCAAAGCCAATGATCCTCAGAGCTCTAGGGTTATTATTTTCTCAAATTATAGAGAAAGTGTGAGGGATATAATGGATGCAGTAGCAAATATTGGGGAACCAATCAGAGCTACCCAATTTATTGGTCAAAGTTCAGGGAAAACAATGAAAGGTCAGTCCCAAAAAGTTCAACAGGCAGTGCTGCAGGTATGTATTCCATTTGGTATAATTTTTGTAGTCCTTGCATATACTTACGTAGTTCACCCACAGAAATTCCGTTCTGGAGCCTACAATGTCATTGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTTGTAGCTTTTGATGCTAATGTGTCACCATTAAGAATGATTCAGCGCATGGGGAGAACTGGAAGAAAGCACGATGGACAAGTTGATATCCTTTGGTTTCCGAAAATGTTTGTTGGCAATTTGATTCCTTCACGGTTGTTACTAGTTTTAGCTTGTGAAGGGACTGAACTGAAGGGATACTTGCGGAAACAAGCCAAGAGCAAGGCTATAAGTAAACACATGCAAAATGGGGGCACAAATAGCTTCACTTTTCATCCTAGTCCCAGGATGATTCCACACGTCTTTAAACCAGAGGTTCAGTTTGTTGAGCTGTCAATTGAGAAATTTGTTTCCCGTGAGAATAAAGTAAAAGGTGATTCTATTCAGCTACATGCATCCATTGGCGAAATTACAGTTGCGGAGAATAATATACTTGCGAAGTATTTTCCCACCACTGGTGAAAATACATGGAAGCCATCTCTTATTGCCTTTCCTCACGTCCAGACATATCCTTCTAGAACAGATAAAGTGAATCATTCATGTAGAGCAATAATGCTCATTGATTTGATGCAACGTCTGCAAGGACAAGCATCATTCTTAGGAAATAATAAAACTTCCATTCTTCAGGATGGGCTGTGTGTAGAAGCTAGTAATACATTCGACTTAAACGAGATTGATGAAGTTAGATCAGACAACAAATCACACTCAAGGCATACAATTGGAAGCAATGCAGCCTCTGTAAGTTGCCTGAGGCTGGATTCCTCTCCTTTAGGGATTCAAACTGAAGACGTTGTTGATCTAACTGCGCCAGATAATATTGTGGGGGAACAGAGATCGCCTAGAACAAGTTGCATAAAGAAGGATGATTTACCGTCATCTAGTTTTATTGACTTAGATAAAAATAAAGAAAAAACATATGAGTTTGAAGAGACAGTTCCTGACACTCCAGTTGCTAAGACAGTAATGTCAAATGAAAGACATATTGATGGTGGAACGCCTGATCTTGCTCAGTTCAAGACATCTTCGTCGCTAGATGATGCATTCAATAATGACATCAACGAGTCCCAGTGTAGTCCCTGTTTGACCATTTTAATTGAAAGCGGTTTTGTTCCAGAGTCTCCCATTGATGAGAGGGGTGATTTTCTTCCAGGGTTATCAAGAAGCCAGCTTGTCATCCGGGACTGTAAACCACCTGTTCATCTCCTGATGGAACAACAAATTACCTCAAGTCTAGGGGCAAATGAAAATGTCATTATTGATAATGCCACAGATGTACATAACTTACCTATTGATCCTGCTAATAATGAAACTCAAACCCTTGTATTTGAACGGAAGAGTTGTGCAATCAGAAGAGGTCATATCTTTAGTTCTCCTACAGTGGAGGAAGGCCAAAATCCTTTTGTGGATATTACAAACCGCAGCGTTAGTGAAGAATCACCTTTATGTTGTGGAGATGTTGCTGAAAGTGTGAAGCCAGCACGTAAATTTAAAAGGTTGCGTAAATCTGATGATGGTAGGCGTCATAGGAAAGAGAAAAGAAGGAAGGATCATGTTGTTTCAACAGAAAATAAGCATGGCCAAGAAGCTGATGTTTCTAATGATGAAGATGGCGAGGACGACAGTTCATCAGATAGTTTCATAGATGACAGGATGAACCCTACAGCGACCACTCAGTCTAGAACTAGCGGAATAGACATGATGGCAATATACAGGCGTTCTTTGCTCAGTCAAATACCAGTTGAAGGAGGAACCAACATTTCTGCTGCATTTAGTCCAGACTATGTGTCCTCCATGACTATAATTAGTGAAAATAGGGATTCTTCTGGCAGCATACCAAAACATTTTCAGACACCTCAAATTGACCCAACAAATCAGTCAGCTTCCAAGAGTTTGCAATCAGTTGAAGTCAACCAAATAACCTCAGAAGCTATGCCTTCAAGTAGTTTCTCTATCGAAACCTCGACACAGATGAGAAGTCGAAAAAGAAAACTGTCATTTCATCGATTCGGATTTCCAAGTACTAATCTTGAGCAGGAATTTGCACTTCAATCAAACGAAGAACCTATGATGGATGCTTCTGCAACTAAGAATATTCTCTGTGATGATCAAATTTTTGATGATATTGATCTTGATGAGTTGGAGGCTCAAGCAGCTTCTCTTCTTAAACAAAAAACAGATTTGTCAGCTCAGAAGCAATATACACATACAGTACCTCAATCTCACTTGCACAACCCTCACATTTCCAACCCATCATTCGACCTTGGGATATGA 3831 0.4043 MSSANPYEIIDDDGEAFDWDAAAREIDAACQVTKPSTSLVGDTSNSRQMTLDKFLGKKETPRAQLEDPKIGKNEQDCFVGGKGASCIEVDSEAVKTWIYPVNVPLRDYQFAITKSAIFSNTLVALPTGLGKTLIAAVVMYNYFRWFPRGKIVFTAPSRPLVMQQIEACHNIVGIPQVSTVSSCKCLVKYLVCLVVDEAHRAMGNYSYCEVVRELMAMPMQLRILALTATPGAKQQTVQQVIDNLHISKLEYRNENDPDVISYVHKRKIELIQVAMGQDAVEINKQLLEVIRPIVGRLSAMGVLKNRDYRTLSPCELLEIREKFRQAHPQDISNVNNVDVEGYFGVLISLYYIHKLLSSHGIRPAHEMLERKLMQGFFAKYVSKNEALLKARMLMQQNLSHGAPSPKLSKMLEILLEHFKANDPQSSRVIIFSNYRESVRDIMDAVANIGEPIRATQFIGQSSGKTMKGQSQKVQQAVLQVCIPFGIIFVVLAYTYVVHPQKFRSGAYNVIVATSIGEEGLDIMEVDLVVAFDANVSPLRMIQRMGRTGRKHDGQVDILWFPKMFVGNLIPSRLLLVLACEGTELKGYLRKQAKSKAISKHMQNGGTNSFTFHPSPRMIPHVFKPEVQFVELSIEKFVSRENKVKGDSIQLHASIGEITVAENNILAKYFPTTGENTWKPSLIAFPHVQTYPSRTDKVNHSCRAIMLIDLMQRLQGQASFLGNNKTSILQDGLCVEASNTFDLNEIDEVRSDNKSHSRHTIGSNAASVSCLRLDSSPLGIQTEDVVDLTAPDNIVGEQRSPRTSCIKKDDLPSSSFIDLDKNKEKTYEFEETVPDTPVAKTVMSNERHIDGGTPDLAQFKTSSSLDDAFNNDINESQCSPCLTILIESGFVPESPIDERGDFLPGLSRSQLVIRDCKPPVHLLMEQQITSSLGANENVIIDNATDVHNLPIDPANNETQTLVFERKSCAIRRGHIFSSPTVEEGQNPFVDITNRSVSEESPLCCGDVAESVKPARKFKRLRKSDDGRRHRKEKRRKDHVVSTENKHGQEADVSNDEDGEDDSSSDSFIDDRMNPTATTQSRTSGIDMMAIYRRSLLSQIPVEGGTNISAAFSPDYVSSMTIISENRDSSGSIPKHFQTPQIDPTNQSASKSLQSVEVNQITSEAMPSSSFSIETSTQMRSRKRKLSFHRFGFPSTNLEQEFALQSNEEPMMDASATKNILCDDQIFDDIDLDELEAQAASLLKQKTDLSAQKQYTHTVPQSHLHNPHISNPSFDLGI 1276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0407 1276 Pfam Helicase conserved C-terminal domain 413 550 IPR001650 -
Lele30g0407 1276 MobiDBLite consensus disorder prediction 1255 1276 - -
Lele30g0407 1276 Gene3D - 184 263 IPR027417 -
Lele30g0407 1276 CDD SF2_C_FANCM_Hef 404 558 - -
Lele30g0407 1276 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 180 479 - -
Lele30g0407 1276 Gene3D - 399 563 IPR027417 -
Lele30g0407 1276 Pfam Type III restriction enzyme, res subunit 119 171 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lele30g0407 1276 Gene3D hef helicase domain 277 398 - -
Lele30g0407 1276 MobiDBLite consensus disorder prediction 1035 1051 - -
Lele30g0407 1276 Gene3D - 106 183 IPR027417 -
Lele30g0407 1276 MobiDBLite consensus disorder prediction 1020 1034 - -
Lele30g0407 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 562 IPR027417 -
Lele30g0407 1276 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 248 IPR014001 -
Lele30g0407 1276 SMART ultradead3 101 269 IPR014001 -
Lele30g0407 1276 CDD FANCM_ID 280 395 - -
Lele30g0407 1276 Coils Coil 1230 1250 - -
Lele30g0407 1276 MobiDBLite consensus disorder prediction 1014 1080 - -
Lele30g0407 1276 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 406 585 IPR001650 -
Lele30g0407 1276 SMART helicmild6 475 551 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0407 Lele-ChrLele30 9088374 9099222 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0407 30 9088374 9099222 Lele31g0504 31 13093031 13093375 hybridization
Lele30g0407 30 9088374 9099222 Lele32g0988 32 6842901 6850911 hybridization