Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0835 ATGAGGGGGGAAGAAATTGAGAAGCTTCGAGGTGTTGTGAGGGACTGCGTTAGCAAGCACCTCTACTCTTCTGCCATCTTCTTCGCAGACAAAGTCGCTGCCTTTACCAATGATCCCGCCGATATCTACATGCAGGCTCAGGCCCTCTTCCTTGGCCGCCATTACCGTCGTGCCTTTCATCTCCTCAATGCCTCTAAGATAGTTCTCCGTGATCTCCGCTTCCGCTACCTCGCTGCCAAGTGTCTTGAGGAGCTCAAGGAATGGGATCAATGCCTATTAATGCTGGGTGAGGCTAAAGTGGATGATCAAGGCAATGTTTCAGATACAAAGGATTCTAATGTCATGTACTTGGATAAAGATGGTGAAGACCGTGAGATCAATATATCTTCTGCAATATGTTTCTTAAGAGGCAAAGCACATGAAGCTCTAGAAAACCGTGCCCAGGCTCGATTGTGGTACAAAGCTGCTATAAAAGCTGACCCTCTATGCTATGAGGCTCTGGAATGTCTTATTGAAAATCACATGATCACGTGTGAGGAGGAAGCAAATTTGATCTCATCGTTGCAATTTGGTAGTGAAGATGGATGGCTTTCATCATTCTATTCATGCTTGATAAAGAAGTATGAGAAGGAAAATGTTGTGGAAGCCAAGTTTCGAGACCTTGAGAACACAAGCTGTAAAATTGACCAATCTAATCCTTCTTTCTTGCGTAAGCTGAAAACCAATACTGACCTATTAGCCTGCAAAGCTGAATACTACCATCAGTGTGGTGAATATCAGAAATGTTTTGAGTTAACATCTGTTCTGCTTGAGAAGGATCCTTTCCATAACAAGACTACCTTAGTACATCTGGGAGCTGCTATGGAGCTTGGACATTCAAATGAGCTCTATCTGATGGCATGCAATCTTGTGAAGGATTATCCTCAAAAGGCCTTATCTTGGTTTGCGGTTGGTTGCTATTACTATTGTATCAAGAAGTATGACCAGTCCCGTCGATATTTCAGCAAGGCAACAAGTCTAGATGGAACATTTGCACCAGCCTGGATAGGCTATGGGAATGCATATGCTGCTAAAGAAGAGGGTGATCAAGCCATGTCGGCTTACCGCACTGCAGCTCGTTTATTTCCTGGGTGCCATTTGCCAACTCTTTACATTGGAATGGAATGCATGCGTACTCACAGCTATAAGCTTGCTGAACAGGCTAAGGCAATTTGCCCCTCAGATCCACTTGTATTTAATGAACTTGGAGTTGTTGCCTACCATATGCAAGAGTATAATAAAGCAGTATGGTGGTTTGAGAAAACATTAGCCCTCATCCCATCCTCTTTAAGTGAAATGTGGGAACCAACTGTAGTTAATCTTGCCCATGCCTACAGGAAGTTGAAGATGTATGATGAAGCAATTTCATACTACGAGAAAGCACTTGCATTGTCAACAAGAAGTTTGAGCACGTATGCTGGTCTAGCATATACATACCACTTGCAGGATGATTTCACTACAGCTATTACTTACTATCACAAAGCTTTGTGGCTTCAACCAGATGACCAATTCTGCACTGAAATGTTAAGTGGGGCTCTTATAGACGAAAGCCGATGTGGGGCCCCGTCTATCCCTTAG 1617 0.436 MRGEEIEKLRGVVRDCVSKHLYSSAIFFADKVAAFTNDPADIYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWDQCLLMLGEAKVDDQGNVSDTKDSNVMYLDKDGEDREINISSAICFLRGKAHEALENRAQARLWYKAAIKADPLCYEALECLIENHMITCEEEANLISSLQFGSEDGWLSSFYSCLIKKYEKENVVEAKFRDLENTSCKIDQSNPSFLRKLKTNTDLLACKAEYYHQCGEYQKCFELTSVLLEKDPFHNKTTLVHLGAAMELGHSNELYLMACNLVKDYPQKALSWFAVGCYYYCIKKYDQSRRYFSKATSLDGTFAPAWIGYGNAYAAKEEGDQAMSAYRTAARLFPGCHLPTLYIGMECMRTHSYKLAEQAKAICPSDPLVFNELGVVAYHMQEYNKAVWWFEKTLALIPSSLSEMWEPTVVNLAHAYRKLKMYDEAISYYEKALALSTRSLSTYAGLAYTYHLQDDFTTAITYYHKALWLQPDDQFCTEMLSGALIDESRCGAPSIP 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0835 538 ProSiteProfiles TPR repeat profile. 409 442 IPR019734 GO:0005515
Lele29g0835 538 Pfam Anaphase-promoting complex, cyclosome, subunit 3 19 97 - -
Lele29g0835 538 SUPERFAMILY HCP-like 314 516 - -
Lele29g0835 538 Pfam Tetratricopeptide repeat 452 509 - -
Lele29g0835 538 ProSiteProfiles TPR repeat profile. 448 481 IPR019734 GO:0005515
Lele29g0835 538 ProSiteProfiles TPR repeat profile. 311 344 IPR019734 GO:0005515
Lele29g0835 538 SMART tpr_5 345 378 IPR019734 GO:0005515
Lele29g0835 538 SMART tpr_5 130 163 IPR019734 GO:0005515
Lele29g0835 538 SMART tpr_5 482 515 IPR019734 GO:0005515
Lele29g0835 538 SMART tpr_5 243 276 IPR019734 GO:0005515
Lele29g0835 538 SMART tpr_5 409 442 IPR019734 GO:0005515
Lele29g0835 538 SMART tpr_5 448 481 IPR019734 GO:0005515
Lele29g0835 538 SMART tpr_5 311 344 IPR019734 GO:0005515
Lele29g0835 538 ProSiteProfiles TPR repeat profile. 345 378 IPR019734 GO:0005515
Lele29g0835 538 Pfam Tetratricopeptide repeat 132 161 IPR019734 GO:0005515
Lele29g0835 538 Gene3D Tetratricopeptide repeat domain 5 527 IPR011990 GO:0005515
Lele29g0835 538 ProSiteProfiles TPR repeat profile. 482 515 IPR019734 GO:0005515
Lele29g0835 538 SUPERFAMILY TPR-like 42 374 IPR011990 GO:0005515
Lele29g0835 538 PANTHER CELL DIVISION CYCLE 16,23,27 22 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0835 Lele-ChrLele29 5580256 5588909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0835 290 514 Glycosyltransferase AT3G04240 24.348 1.32e-10 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0835 29 5580256 5588909 Lele31g0696 31 14814390 14822967 hybridization
Lele29g0835 29 5580256 5588909 Lele32g0814 32 5400221 5408874 hybridization