Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0455 ATGGCGGTTTGCCGGAAAATCACCCTTTGTAATCGGGTTGAGCTCCGCTTTTCTGGTCTCCGGCGACGCATTCTCCGCCTTCTCCACCACTTATTTCTCTGTTCCGGAGGCAAGCCTTCCCAGTACCTCATGCTACCACATTTCGCCGAGCATTCTCCAACGTCTTCCTCCGCCAGTGAGGCTATTCATGACGAATCGGGTCAGGGCTCGCTATCTCAATTTCACAAGCCTGATTTCGACTCCGATTTGGTTGCTCTCAAGATCAGCCTCCTGGGGAACTGCCAGATAGGAAAGACCAGTTTTCTGGAGAAATACGTAGGGAATGAACATGAACAGGGAAGCCAGGAGAAGAAGGGACTGAATCAGATGGACAAAACTTTATTCGTGGAAGGGGCACGTATATCTTATTGTATCTGGGAAGTAGAAGGTGGTGGAAGGTCACAGGACCAGATCGCATTGGCTTGTAAGGACTCTGTGGCAATCTTGTACATGTTTGATCTAACAAGCCGATGCACGTTAAACAGTGTGATTGGGTGGTACAAACAAGCCAGGAAATGGAATCAGACCGCAATTCCAGTGATGATAGGAACCAAGTTTGATGATTTCATTCAACTTCCCATGGATATGCAATGGACCATTGCCAGTGAGGCAAGAAGATACGCAAAGGCCATGAATGCAACACTCTTCTTTTCCAGTGCAGCCTACAACATCAACGTGAACAAGATCTTCAAGTTCATCACAGCCAAACTCTTCGACCTGCCATGGACACTGGAGCGAAATCTAACTGTTGGCGAGCCCATCATAGATTACTAG 813 0.4785 MAVCRKITLCNRVELRFSGLRRRILRLLHHLFLCSGGKPSQYLMLPHFAEHSPTSSSASEAIHDESGQGSLSQFHKPDFDSDLVALKISLLGNCQIGKTSFLEKYVGNEHEQGSQEKKGLNQMDKTLFVEGARISYCIWEVEGGGRSQDQIALACKDSVAILYMFDLTSRCTLNSVIGWYKQARKWNQTAIPVMIGTKFDDFIQLPMDMQWTIASEARRYAKAMNATLFFSSAAYNINVNKIFKFITAKLFDLPWTLERNLTVGEPIIDY 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0455 270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 263 IPR027417 -
Lele29g0455 270 FunFam Septum-promoting GTP-binding protein 1 76 260 - -
Lele29g0455 270 ProSiteProfiles small GTPase Rab1 family profile. 80 270 - -
Lele29g0455 270 PRINTS Transforming protein P21 ras signature 188 201 - -
Lele29g0455 270 PRINTS Transforming protein P21 ras signature 127 149 - -
Lele29g0455 270 PRINTS Transforming protein P21 ras signature 86 107 - -
Lele29g0455 270 PRINTS Transforming protein P21 ras signature 228 250 - -
Lele29g0455 270 Gene3D - 80 259 IPR027417 -
Lele29g0455 270 PANTHER - 83 257 - -
Lele29g0455 270 Pfam Ras family 87 250 IPR001806 GO:0003924|GO:0005525
Lele29g0455 270 SMART rab_sub_5 86 253 - -
Lele29g0455 270 PIRSF GTPase_Tem1 3 270 IPR017231 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0455 Lele-ChrLele29 2784608 2786054 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0455 29 2784608 2786054 Lele31g1089 31 17684745 17686199 hybridization
Lele29g0455 29 2784608 2786054 Lele32g0436 32 2752674 2754129 hybridization