Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0321 ATGGTCGAAGCCGAACCCAAGTTCTTCATGCCGGACTCCGTCCGCAGCGTGAGTTACGACATCGCCGGACAGATTAAGCTCATATGGGAAGTGGTCAAAACGCCATTAATTGTGCCACTTCTGAACCTTTCAATCTACATTTGCTTGGCAATGGCTCTTATGCTCTTCATTGAGAGGCTGTATATGGGAGTCGTCATCATCCTCATCAAGCTCTTCTGGAAAAAACCAGAACAGCGTTACAGATACGAGCCCATCCAAGACGACGTTGAATTGGGCTCCTCCAATTTCCCTGTAGTTCTTATCCAAATCCCAATGTTCAATGAAAAAGAGGTTTACAGGGTTTCCATTGGAGCAGCTTGTGGTCTTTCATGGCCTTCGGACCGTCTGGTGATCCAAGTCCTCGATGATTCTACTGACCCTGCTATCAAGCAAGTGGTGGAGCAAGAGTGCCTGAGATGGGCGAGCAAAGGAATAAACATAACGTATCAAATCAGAGAGAACAGAACGGGATACAAAGCGGGGGCGTTGAAAGAAGGGCTGAAGCGGAGCTACGTGAAACACTGCGAGTACGTGGCCATTTTCGACGCCGACTTCCGGCCGGAGCCGGACTTTCTCCGGCGAGCCATTCCCTTCTTGGATGGCAACCCCGACCTGGCTCTGATTCAAGCACGCTGGAGATTCGTGAATGCGGATGAATGTCTATTGACAAGAATGCAAGAGATGTCTCTGGATTACCATTTCACAGTGGAGCAAGAAGTTGGATCAGCTACACATGCCTTCTTTGGTTTCAATGGCACAGCAGGTGTTTGGAGAATTGCCGCTATCAATGAAGCAGGAGGTTGGAAAGACAGAACAACTGTGGAGGACATGGATCTTGCTGTTCGTGCTAGCCTTAGAGGTTGGAAATTTCTCTACCTCGGTGACCTCCAGGCAAAAAGTGAGCTTCCCAGTACTTTAAGGGCCTTCCGTTTTCAGCAACATCGATGGTCTTGTGGTCCTGCTAATCTTTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAGAAAGTGAAGTTTTGGAAGAAAGTGTATGTGATATATAGCTTCTTCTTTGTACGTAAAATCATAGCCCATATGGTTACCTTCTTCTTCTATTGTGTGGTTCTTCCCCTCACAATTTTGGTCCCTGAGGTTCATGTTCCTATTTGGGGAGCTGTTTACATTCCTTCCATCATCACCACCCTCAACTCAGTGGGGACTCCAAGGTCCATTCACTTATTGTTCTACTGGATCCTCTTTGAGAATGTCATGTCTCTGCATCGTACCAAAGCAACTTTTATAGGTCTGCTTGAGTATGGAAGAGCTAATGAGTGGGTTGTCACTGCAAAACTTGGAGACTCTGTGACTAATAAGAACAAAGCAGATTCTGCCAAGAACAAGGCAAATGTCACCAAACCTGTTAGAAAACCCAGGCTCAAATTTGCGGAAAGGTTTAATTTACTAGAGCTGGGATTTGCAGCCTTCCTCTTCTTTTGTGGATGCTATGATTTTGTAAATGGGAAGAACTACTACTTTGTGTACCTCTTCCTTCAGACCATAACCTTTTCCATTGTTGGATTTGGTTATGTTGGCACCATTGTGTGA 1623 0.4596 MVEAEPKFFMPDSVRSVSYDIAGQIKLIWEVVKTPLIVPLLNLSIYICLAMALMLFIERLYMGVVIILIKLFWKKPEQRYRYEPIQDDVELGSSNFPVVLIQIPMFNEKEVYRVSIGAACGLSWPSDRLVIQVLDDSTDPAIKQVVEQECLRWASKGINITYQIRENRTGYKAGALKEGLKRSYVKHCEYVAIFDADFRPEPDFLRRAIPFLDGNPDLALIQARWRFVNADECLLTRMQEMSLDYHFTVEQEVGSATHAFFGFNGTAGVWRIAAINEAGGWKDRTTVEDMDLAVRASLRGWKFLYLGDLQAKSELPSTLRAFRFQQHRWSCGPANLFRKMVMEIVRNKKVKFWKKVYVIYSFFFVRKIIAHMVTFFFYCVVLPLTILVPEVHVPIWGAVYIPSIITTLNSVGTPRSIHLLFYWILFENVMSLHRTKATFIGLLEYGRANEWVVTAKLGDSVTNKNKADSAKNKANVTKPVRKPRLKFAERFNLLELGFAAFLFFCGCYDFVNGKNYYFVYLFLQTITFSIVGFGYVGTIV 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0321 540 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 22 538 - -
Lele29g0321 540 CDD CESA_CaSu_A2 97 333 - -
Lele29g0321 540 Pfam Glycosyl transferase family group 2 190 399 IPR001173 -
Lele29g0321 540 FunFam Glucomannan 4-beta-mannosyltransferase 9 88 316 - -
Lele29g0321 540 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 88 316 IPR029044 -
Lele29g0321 540 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 378 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0321 Lele-ChrLele29 1957042 1961042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0321 1 540 Miscellaneous Gene Families AT5G22740 79.298 0.0 902
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0321 29 1957042 1961042 Lele31g1221 31 18546088 18549760 hybridization
Lele29g0321 29 1957042 1961042 Lele32g0307 32 1922398 1926077 hybridization